Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g01487 ATGTCTGATCAAGGGAAGAACAAGAAAGCTGCTCTCATCGGTGTATCTTCCTTGTTTCTTGTTGCCATGGTAGTTGCAGTCGCAGTCGGTGTCAATCGAAATAGCCCCAACGCCAGCGGTGGTGGCGACAGTGCCGCCACAGCCGAGATTTCGACCTCCACCAAAGCAGTCAAGGCTCTCTGTCAGCCCACTGACTACCAAGAAACCTGCGAGAAAGCTCTGTCTGAGGCCGGAACCAACACGAGCGACCCACGTGAGCTAATCAAAGCTGGTTTCAATGTCGCCGTCAACGAAATCAAATGGGCCATTGGAAATTCCACCACTCTGAAAGAAGCCGCCTCTGACCCAATGGCTAAACAAGCTCTTGACGCCTGTGGTGAGCTTATGGATTATGCAATTGACGATCTCGTAATTTCCTTTCAAAGAATCACAGACAATTTCGACATGCAGAAACTCGATGATTACATCGAAGATCTTAAGGTTTGGTTGAGTGGCGCATTGACTTATCAAGAAACTTGCATAGACGGCTTCGAAAATGTCACCGGCGATACCGGGGAAAAGATGACGAAATTGTTGGAAACGTCGAAAGAATTGACAATTAATGGGCTTGGAATGGTGAGTGAAGTTACTTCCATATTGACCTCTTTTGGGCTCCCAGCAATTGGACGACGGTTAATGACGGAGGAATCTAATGAACAAAGGGAAGAACCGTCGTGGGTCAGAGACAGACGGGGGCTTCTCCAAGCCACCGGCGCCAACATCAAGGCGGATGCCGTGGTGGCGAAAGACGGAAGTGGAAAGTACAAAACTGTGACTGCAGCCTTAAATGATGTCCCAAAGAAGAGCAATAAAACGTTTGTGATTTACGTTAAGGCAGGGGTTTATCAAGAACAAGTAATGGTAGAGAAAAGTATGACTTGGGTGATGATGATCGGAGATGGTCCGACTAAAACTAAGATTACAGCCGGGAAGAACTACATCGATGGAACACCCACCTTCAAAACCGCTACCGTTTCTGTGATTGGAAGCAACTTCATTGCGAAGGACATCGGCTTCGAGAACTCTGCCGGAGCAGCAAAGCATCAGGCGGTGGCACTTCGAGTTCAATCCGACATGTCAGTCTTCTACAATTGTCAAATGGACGGTTACCAAGACACTCTCTACACACACGCTCACCGTCAATTCTACCGAGACTGCACCATCACCGGAACCATCGATTTCATCTTCGGAAACGGCGCCGTTGTATTCCAAAACTGCAAGATCCTAGTGAGGAAGCCAATGGATAATCAACAATGCATCGTCACCGCGCAGGGCCGAACTCAACGGAAAGAGCCAACCGCCATAATCTTGCAAAATTGTGCCATTTCCTCAGCCCCTGACTTCTTCCCGATCCGCCACATCAACAAGGCTTTCCTGGGCCGGCCATGGAAGCAATATTCAAGAACAATCATAATGCAATCCCAAATTGATGACTTGATTCAACCTGAAGGGTGGCTTCCATGGACGGGAAATTTTGCTCTGAATACTCTGTTTTATGCAGAGATCAATAACAGGGGACCAGGAGCAGCTACGGATAAACGTGTGAAGTGGAAGGGAATTAAGAAGATCACTATGGAACACGCCTTAGATTTCACTGCTGCGAGATTTATTCGTGGAGATCCCTGGATCAAGCCCACCGGCGTTCCGTACACTTCGGGCATGATGGCAGTATAA 1713 48.1 MSDQGKNKKAALIGVSSLFLVAMVVAVAVGVNRNSPNASGGGDSAATAEISTSTKAVKALCQPTDYQETCEKALSEAGTNTSDPRELIKAGFNVAVNEIKWAIGNSTTLKEAASDPMAKQALDACGELMDYAIDDLVISFQRITDNFDMQKLDDYIEDLKVWLSGALTYQETCIDGFENVTGDTGEKMTKLLETSKELTINGLGMVSEVTSILTSFGLPAIGRRLMTEESNEQREEPSWVRDRRGLLQATGANIKADAVVAKDGSGKYKTVTAALNDVPKKSNKTFVIYVKAGVYQEQVMVEKSMTWVMMIGDGPTKTKITAGKNYIDGTPTFKTATVSVIGSNFIAKDIGFENSAGAAKHQAVALRVQSDMSVFYNCQMDGYQDTLYTHAHRQFYRDCTITGTIDFIFGNGAVVFQNCKILVRKPMDNQQCIVTAQGRTQRKEPTAIILQNCAISSAPDFFPIRHINKAFLGRPWKQYSRTIIMQSQIDDLIQPEGWLPWTGNFALNTLFYAEINNRGPGAATDKRVKWKGIKKITMEHALDFTAARFIRGDPWIKPTGVPYTSGMMAV* 571
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 11030190 11032329 - CsaV3_3G014870.1 Csa03g01487 522392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g01487 570 SMART PMEI_2 52 205 IPR006501 GO:0004857
Csa03g01487 570 Pfam Pectinesterase 257 553 IPR000070 GO:0030599|GO:0042545
Csa03g01487 570 PANTHER PECTINESTERASE 12 567 - -
Csa03g01487 570 Gene3D - 251 567 IPR012334 -
Csa03g01487 570 TIGRFAM PME_inhib: pectinesterase inhibitor domain 51 204 IPR006501 GO:0004857
Csa03g01487 570 PANTHER PECTINESTERASE 12 567 - -
Csa03g01487 570 SUPERFAMILY Pectin lyase-like 254 566 IPR011050 -
Csa03g01487 570 Pfam Plant invertase/pectin methylesterase inhibitor 56 203 IPR006501 GO:0004857
Csa03g01487 570 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 55 209 IPR035513 -
Csa03g01487 570 ProSitePatterns Pectinesterase signature 2. 401 410 IPR033131 -
Csa03g01487 570 Gene3D Invertase/pectin methylesterase inhibitor family protein 51 209 IPR035513 -
Csa03g01487 570 CDD PMEI-like_3 59 211 - -
Csa03g01487 570 ProSitePatterns Pectinesterase signature 1. 282 301 IPR018040 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa03g01487 Csa06g01790 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g01487 Csa-Chr3:11030190 Csa05g02898 Csa-Chr5:29464400 7.05E-165 dispersed
Csa01g02747 Csa-Chr1:24351481 Csa03g01487 Csa-Chr3:11030190 0 wgd
Csa03g01487 Csa-Chr3:11030190 Csa06g01790 Csa-Chr6:15830169 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g01487 K01051 - csv:101212686 1129.01