Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g01491 ATGAGTTCTGTTTTCAAACAACTTATTCTTCTTACCTTGCTATTAGTAGCATTGGTTGCTGTTGACGCCAAGTTGCTCGCCGGGCCGATCTCGCCGGACCCCTTTCTAAATGTCAATTTAGGGAAGGACATTAAACATAGAAAGGAAACAGTGTTTAATGTGCTGAGTTTTGGTGCCAAACCTGATGGCAAAACAGACAACAGTGAGAGTTTTATGAAGACATGGGTAGCAGCATGTCACTCCAAGGGAGCTGCAAGAGTTGTTATTCCTCGTGGTACTTTTTTGATCAATCAAATTGCATTTGCTGGGCCATGTGCTTCTACAAGTCCTATCATCGTTCAAATTGATGCAACGTTGAAAGGAGGCGTCGACATTAGCAATTACTTCTCGGATGAATGGATATTGTTTGAGAAGATCAATGGTTTGATTGTCACTGGCAGAGGTGCTTTAGATGGACAAGGTAGTGCTGTTTGGGAATACAATGATTGTGGTATGAATCCTAATTGCCAGAAACTCCCTGTTAATTTAAAACTCAATAACATCACACATGGGCTTGTGAAAGGCATTAGTTCCGTCAACAGCAAAGGGTTTCATATGTTCGTCACGAACTGTGAGAATGTTAGGCTAAGAAAACTGCACTTAACAGCCCCAGAAGACAGTCCAAACACTGATGGCATACATCTCAGCCGCTCCAACAATATCAAAATATCGAGATCTGTCATTGCCACCGGTGACGATTGCATCTCTCTCGGTCGAGGATCAATGAATGTCGCCATCAACAAAATCACCTGCGGTCCAGGACACGGTATCAGTGCAGTCGAGAATTTCATTAACGTCATGAAGCTAATTTCATCACTTTCATTATTCTCTTCTCTTCTGGCCATTACTTTATCTGCCGCCGATGGATTTGATATAGCTCTTCCGCCGTCCTACCCGGCGGAGCCCCCCGTGGGAGATCCTTGGAGTGGATTGCGTGTTTTTGATGTAAATGATTATGGGGGAGTTGCTGATGGGAAGACGAACAACAGCTTGGCATTGATGGCGGCGTGGGAAGATGCATGTTATCACCAAGGAGGGTCGATGCTGTTAATACCGGAGGGGAATTACTTCGTTGACCAAGTTACATTTTCAGGGCCATGTTTCAATGACCTCTCTCCTAAAGTCCTCATTTTAGGCACTTTGATTGCTCCCACCAATCTCACCGCCGACGTTTGGATCCACTTCGATTCCCTCCGCCGCCTCTCCCTCACTGCCGGCCACTTATCCACCCTCGACGGCCGGGGCGCCCAAACCTGGTCCTCCGGTTCCCGCTGTCGTCATGCAATGACTTGTGCCATGTTTGCCATTTCTTTGAAGCTAAGCAATGTGTTGAATGGGACAGTGAGTAGTATAAACCTAGTGGACAGCAAGGCGTTTCATGTCTCCATCCATCAGTGTGACAATATTCATCTTTCTGGATTCAATATCACAGCTCCTTGGTATAGTCAAAACACTGATGGATTCCATATCAGCCAATCTACCAACATCAGCATCACAAACTCAAAAATCGGTGTTGGTGATGATTGTGTTTCCATTGGACCTGGTAGCGTGAACGTGTTGGTTTCTAATGTTACATGTGGCCCAGGACATGGAATCAGGGAGTCAAGGTCGGTAAAGCTTGAAAGCACCAGAGAGAGCTCAGATTCACGAGAGTCTCTTTGGAGCAACCCTGCTTTGCGCTGCCGTCGTCGGATCTATCATCTCCTCTCCTTTTCCGGTTTAGGTACGTTTTTTAAAAGGGTAGATCCCTTTTTAATTTTTGATTTTATTCTTTATCTGGGGATTTCAATTCAACAAGCCATGAATTCTAATTTCGGGAAGAATTTCGACTTTGATCTGGGACTCGGATCTTCTGGCTCCAAATCACTCAACGATCAGAAAAACAAAACCCCATCCTATTCATCTTACACTCCCTCTGCTTCCTCCTACTCTTCTACCCCCACGAGGCCCGCCTGGCAGCCTAACAAGCCCTCCTGGACGCATCAGCCCGCCATGAATCAGGCTGCTCGTCCTAACTTGTCCAATTCCCCTGCTTCCATGGTTGGTGATATATTTGGGAAGACCTGGGGTTCCAAGGCAACTTCCGCTTCCACGACGGGTATTGGAATTGCTGAAAAGAATCCGAATCTGTTCGGCGATTTGGTCGGTTCTGCCTTGGGATCGGGTAAGAGCAATTCTAATACTCCATTGAAGAATGTGGGTCCGGCTTCGGTGTCTTCCGGTGCCGCATTGAATAGAAATTCGTTTTCGATGGGAAATATGAACGATTCCTTGCCTAAATCCAGTAGTAATCCGAGTAAAAATAGTGGAAATTGGAGTTTTGAGAATCTTAGCAATTACAATAACGGGAAAAGTAATCAGAGTAATACCACCAATATCAAGACTCCCAATCTCGGAGGTCCAAGCATGAGTTCAACCATCGGCGGTGGTAAGACAAGCTCTACCAAAGATCCCTTTGGTTCTTTAGTTGACTTTGGATCTAAATCATCTGGGAATCTGAATTCAACTACTAAGAATCAAAATATCAAATCAAGCGAGGACTCATTTGGGGATTTCCAGAATGCTTCTAATCCAAGCGCTACGACATTTCCTTCAAGCAGATCAAGCACCAATGGAGTTGATTTCAAGGGATCGAGTTTTAATTCTGGCATAAACATGGGTGATTTTGGAATGCCTACCAATTTTCATTCCAAGGTTCAAGATACTGTTCAGACCACAGCCAGTGATCCACTTGATATGTTGTTTAGCTCATCCAAAGCCCCAGCTGAAGGTCCTCCCTTGGCATCTGGCACACCTGGAGCATCCCAATCATTGGATGCCGATGATTGGGGATTGGATTCGGACTTTGGGGGAGGTGGTCATGACGTGGGTGGTTCAACAACTGAGATTGAAGGACTTCCACCACCTCCCGCAGGGGTGACAGCTTCTTCTGCAAAGAACAAGGGAGTTGATGTCTACAGGCAGGGGCAATATGCCGATGCTATTAAGTGGCTTTCTTGGGCTGTCATTCTTTTTGAGAAAACTGGTAACAGTGCTGCCATAGTTGAAGTTTTGTCGACCCGAGCTTCGTGCTACAAAGAAGTTGGGGAATATAAGAAAGCTGTGGTTGATTGTACAATGGTAAAAAATTCAAATTCTCTTGTAATTAAATATTTGCTAATGCACCCTTTGTCTCACTCCTCTTAG 3225 45.24 MSSVFKQLILLTLLLVALVAVDAKLLAGPISPDPFLNVNLGKDIKHRKETVFNVLSFGAKPDGKTDNSESFMKTWVAACHSKGAARVVIPRGTFLINQIAFAGPCASTSPIIVQIDATLKGGVDISNYFSDEWILFEKINGLIVTGRGALDGQGSAVWEYNDCGMNPNCQKLPVNLKLNNITHGLVKGISSVNSKGFHMFVTNCENVRLRKLHLTAPEDSPNTDGIHLSRSNNIKISRSVIATGDDCISLGRGSMNVAINKITCGPGHGISAVENFINVMKLISSLSLFSSLLAITLSAADGFDIALPPSYPAEPPVGDPWSGLRVFDVNDYGGVADGKTNNSLALMAAWEDACYHQGGSMLLIPEGNYFVDQVTFSGPCFNDLSPKVLILGTLIAPTNLTADVWIHFDSLRRLSLTAGHLSTLDGRGAQTWSSGSRCRHAMTCAMFAISLKLSNVLNGTVSSINLVDSKAFHVSIHQCDNIHLSGFNITAPWYSQNTDGFHISQSTNISITNSKIGVGDDCVSIGPGSVNVLVSNVTCGPGHGIRESRSVKLESTRESSDSRESLWSNPALRCRRRIYHLLSFSGLGTFFKRVDPFLIFDFILYLGISIQQAMNSNFGKNFDFDLGLGSSGSKSLNDQKNKTPSYSSYTPSASSYSSTPTRPAWQPNKPSWTHQPAMNQAARPNLSNSPASMVGDIFGKTWGSKATSASTTGIGIAEKNPNLFGDLVGSALGSGKSNSNTPLKNVGPASVSSGAALNRNSFSMGNMNDSLPKSSSNPSKNSGNWSFENLSNYNNGKSNQSNTTNIKTPNLGGPSMSSTIGGGKTSSTKDPFGSLVDFGSKSSGNLNSTTKNQNIKSSEDSFGDFQNASNPSATTFPSSRSSTNGVDFKGSSFNSGINMGDFGMPTNFHSKVQDTVQTTASDPLDMLFSSSKAPAEGPPLASGTPGASQSLDADDWGLDSDFGGGGHDVGGSTTEIEGLPPPPAGVTASSAKNKGVDVYRQGQYADAIKWLSWAVILFEKTGNSAAIVEVLSTRASCYKEVGEYKKAVVDCTMVKNSNSLVIKYLLMHPLSHSS* 1075
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 11048972 11059783 + CsaV3_3G014910.1 Csa03g01491 522396

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g01491 1074 MobiDBLite consensus disorder prediction 757 887 - -
Csa03g01491 1074 Pfam Glycosyl hydrolases family 28 354 545 IPR000743 GO:0004650|GO:0005975
Csa03g01491 1074 Pfam Glycosyl hydrolases family 28 79 271 IPR000743 GO:0004650|GO:0005975
Csa03g01491 1074 SMART pbh1 506 527 IPR006626 -
Csa03g01491 1074 SMART pbh1 231 252 IPR006626 -
Csa03g01491 1074 SMART pbh1 479 505 IPR006626 -
Csa03g01491 1074 SMART pbh1 204 230 IPR006626 -
Csa03g01491 1074 SUPERFAMILY TPR-like 990 1065 IPR011990 GO:0005515
Csa03g01491 1074 Gene3D - 322 557 IPR012334 -
Csa03g01491 1074 Gene3D - 40 286 IPR012334 -
Csa03g01491 1074 SUPERFAMILY Pectin lyase-like 323 545 IPR011050 -
Csa03g01491 1074 SUPERFAMILY Pectin lyase-like 49 271 IPR011050 -
Csa03g01491 1074 MobiDBLite consensus disorder prediction 926 990 - -
Csa03g01491 1074 PANTHER EXOPOLYGALACTURONASE-LIKE 294 546 - -
Csa03g01491 1074 PANTHER EXOPOLYGALACTURONASE-LIKE 7 272 - -
Csa03g01491 1074 PANTHER - 294 546 - -
Csa03g01491 1074 PANTHER - 7 272 - -
Csa03g01491 1074 MobiDBLite consensus disorder prediction 633 690 - -
Csa03g01491 1074 Gene3D Tetratricopeptide repeat domain 986 1067 IPR011990 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g01491 - - - csv:101207802 834.328
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g01491 Csa-Chr3:11048972 Csa07g01867 Csa-Chr7:18685479 4.85E-45 dispersed
Csa03g01491 Csa-Chr3:11048972 Csa07g00209 Csa-Chr7:1669024 3.80E-40 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g147 . . . . . . . . . . Cma06g01542 Cma14g01607 . Car14g01426 . Cpe08g00170 Cpe03g01349 . . . . . . . . . . . . . . . . Cone7ag0129 Cone4ag0134 . . . . . . . Bda13g00198 . . Bma02g00918 . . . Cmo14g01643 . . . . . . . . . . . . . . . . . . . . . Csa03g01491 Chy06g00729 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008564 1 1 0 1 0 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa03g01491 Csa_Chr03 FPKM 12.169537 12.946586 9.452484 9.901408 13.406667 12.52976 12.980735 7.986159 6.708303 6.285971