Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g01495 ATGATTCCAGAACTTGAGAAACCGAAGATTACTGAGATAAAGGTCCGGATGGACTGTAATGGCTGTGTCCAGAAGATCAAGAAAGCATTGTATGGAATTAATGGCATTTATGATATCTACATAGACTTTCCCCAGCAGAAACTCACTATCATTGGATGGGCTGAGCCTGAGAGAATCATGAAAGCCATTAAGAAAACAAGGAAGATTGCCACCATTTGTTCTGATTCTGAACAGACGGATCCTCAAGCTGCTCCCACTGGCCAACCGCCGGATTCTATGGCTCCGGCCGGCAGTGAACCACCCAATTTTTCATCAGGTCCTTCTCCTCCTGACATGGTCATGGGTGGTGGTCCTACTGATATGGCCACGGGTGGCGCGCCCCCACCTGGCCAAATGGTCGTTCAAGATGGTAGTTTTGATCCAACCAACGGCCAACAACCACCACACCCTGGGGGATATGATGCTGGACAAGGCCATGTCAGCCACCAGCCGTCCGATAATGGCCATATCGTCCACCAATATCCGTCAGAATCTGGCCATGTTGTCCACCATCAAGGATCAGGACCAGGACCAGAACCTGGCCATGTCATCTCTCACCAACCTGAGTATAGCCATGTGGTCCACCATCAACCACCAGAATCCTTCCACGTAGGCCATCAACCATCCGAGCACGTCCACATGGTTAACCAGCCACCTGATCATGGTCACACCGTTTACTCCCACCAGCCCCCTGATCACAGCCAGACGGTTCAATACCATCAGCCACCAAATTATAGCCAAAGCCATGTAGTCCACCACCACCAACCCGAATACAGATACGCCTCTAGCCACAACTACCACCACAACATTCCAGGAGCGACATCAATGCAGCCGGCAACCGTGATACACAGCTACAACACATACAAGCCATCGCCATACATTACCGAGTATGTCCGACCACTCACATACAGCAGGCCCCCAGTATACGCCTCCGAATCCATACCACAGCAGCCAACCACCCATTATAGCCCAAGACTGGATCTTTACAATTACAATGAAGACTATTACAACACAGGCACAGGCAGTAGCAATGGGAACATCACATCAATATTCAGCGACGAGAATCCGAACGCTTGTAATCTAATGTAA 1128 49.91 MIPELEKPKITEIKVRMDCNGCVQKIKKALYGINGIYDIYIDFPQQKLTIIGWAEPERIMKAIKKTRKIATICSDSEQTDPQAAPTGQPPDSMAPAGSEPPNFSSGPSPPDMVMGGGPTDMATGGAPPPGQMVVQDGSFDPTNGQQPPHPGGYDAGQGHVSHQPSDNGHIVHQYPSESGHVVHHQGSGPGPEPGHVISHQPEYSHVVHHQPPESFHVGHQPSEHVHMVNQPPDHGHTVYSHQPPDHSQTVQYHQPPNYSQSHVVHHHQPEYRYASSHNYHHNIPGATSMQPATVIHSYNTYKPSPYITEYVRPLTYSRPPVYASESIPQQPTTHYSPRLDLYNYNEDYYNTGTGSSNGNITSIFSDENPNACNLM* 376
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 11087652 11089434 - CsaV3_3G014950.1 Csa03g01495 522400

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g01495 375 SUPERFAMILY HMA, heavy metal-associated domain 9 68 IPR036163 GO:0046872
Csa03g01495 375 MobiDBLite consensus disorder prediction 224 264 - -
Csa03g01495 375 PANTHER COPPER TRANSPORT PROTEIN ATOX1-RELATED 1 374 IPR045181 GO:0046872
Csa03g01495 375 CDD HMA 12 71 IPR006121 GO:0046872
Csa03g01495 375 Gene3D - 7 72 - -
Csa03g01495 375 Pfam Heavy-metal-associated domain 14 66 IPR006121 GO:0046872
Csa03g01495 375 MobiDBLite consensus disorder prediction 241 264 - -
Csa03g01495 375 PANTHER OJ1116_C07.8 PROTEIN 1 374 - -
Csa03g01495 375 ProSiteProfiles Heavy-metal-associated domain profile. 17 72 IPR006121 GO:0046872
Csa03g01495 375 MobiDBLite consensus disorder prediction 75 198 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g01495 - - - csv:101208528 790.03
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g01495 Csa-Chr3:11087652 Csa06g03183 Csa-Chr6:27051542 1.15E-12 dispersed
Csa03g01495 Csa-Chr3:11087652 Csa01g02329 Csa-Chr1:20431960 3.55E-16 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g130 . . . . . Bpe14g01110 . . . . Cma06g01546 Cma14g01615 Car06g01312 Car14g01434 . Cpe08g00178 Cpe03g01356 Bhi01g01055 Tan10g1044 . . . . . . . . . . . . . . Cone7ag0125 . . . . . Blo02g00490 Blo07g00162 Bda11g00515 Bda13g00204 . Bpe13g00679 . Bma06g01485 . . Cmo14g01652 . . . . . . . . . . . . . Cla05g00677 Cam05g0744 Cec05g0750 Cco05g0750 Clacu05g0736 Cmu05g0701 Cre05g0775 . Csa03g01495 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005312 2 2 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 2 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa03g01495 Csa_Chr03 FPKM 2.481186 3.334834 4.707533 6.623235 10.404298 10.772415 11.534571 14.018532 14.722716 15.093953