Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g01496 ATGTCAGTCTCCGGTGGTGTTTCGATTGCCCGAATCCGTGGCGAGAATCGCTTCTACCATCCACCTGCGATGCGACGTCGTTTGCAGCAGCAGCAGCAGCAGCAGCAGCAACAGCAACAACAACAACAACAGCAGCAGCAACAGCAGCCGAAGCAAAGTGCTTTAGATTCTAAGGACGTTGTGGCGGCTGCTACTTCCACGATCGACGACTTGGAAAAGAGGAGTGAGTTTGATGAGTGTCGTTCTTGGTCCACTCGCTCTGATTGTTCTGTTTCCGATCGGGGACTCGCTGATTCTACTAATTTGGATCGCTTTTTGGAGCATACTACTCCTCTTGTTCCGGCTCATTGTATTCCTAAGACGAGTCTGAGGGGGTGGAGAAATCGTGAAGTTTCAGAGGCATCTCCTTATTTTGTGCTCGGTGATCTCTGGGAATCTTTCAAGGAATGGAGTGCATATGGAGCCGGTATCCCTCTATTGTTAAATGGCAGTGACTCTGTAGTACAGTATTATGTTCCATATCTGTCCGGCATTCAACTCTATGTTGATCCTTCAAAGTCCTCTGCACTAAGTAGAAGGCGTGGTGCAGATAGTGATGCTGAGTCATCAAAGGAAACAAGCAGTGATGGAAGCAGTAATTCTGGGGCGGAAAAGAAAACGAAAACTGCCCTTCAGAATGAGTGGATACAGGACTTTAATGTTCCGGGGTCACAAAGAGCTCTTCAGATGAATGTACCTTCTTCCGAGTCATCGAGTGATGAAAGTGACTCTTGCTACCGTCATGGTCAGCTTGTTTTTGAATACTTGGAACGTGATCCACCATTTTGTCGTGAACCATTAACTGATAAGATCACTGTCCTTGCATCACGTTTTTCTGAATTAAAGACATACAGGAGCTGTGACTTATCTCCTTCCAGTTGGATATCTGTGGCATGGTATCCAATTTATCGGATTCCGACGGGGCCGACTCTACAAAGTCTAGATGCTTGTTTCTTGACCTTCCATAATCTGTCAACAGCATTTCAAGGCATCAGCACGGATGGTTTACAATTCCATTGGCCAAGAGTTAGAGAGGTGTACACTGCAGATTGCCCTCTCAAACTGCAGTTGCCAATATTTGGACTTGCTTCCTATAAGTTCAAAATTCCTTTTTGGAATTCGACTGGTGCAGAGGAATGTTCGAAGGCTCACTCTTTGTGGCAAGATGCCGACAGCTGGCTTAGGTTATTAAACGTAAACCATCCTGATTACAGATTTTTCGCATCTCATAACTCATTCTGGAGATGA 1287 45.69 MSVSGGVSIARIRGENRFYHPPAMRRRLQQQQQQQQQQQQQQQQQQQQQPKQSALDSKDVVAAATSTIDDLEKRSEFDECRSWSTRSDCSVSDRGLADSTNLDRFLEHTTPLVPAHCIPKTSLRGWRNREVSEASPYFVLGDLWESFKEWSAYGAGIPLLLNGSDSVVQYYVPYLSGIQLYVDPSKSSALSRRRGADSDAESSKETSSDGSSNSGAEKKTKTALQNEWIQDFNVPGSQRALQMNVPSSESSSDESDSCYRHGQLVFEYLERDPPFCREPLTDKITVLASRFSELKTYRSCDLSPSSWISVAWYPIYRIPTGPTLQSLDACFLTFHNLSTAFQGISTDGLQFHWPRVREVYTADCPLKLQLPIFGLASYKFKIPFWNSTGAEECSKAHSLWQDADSWLRLLNVNHPDYRFFASHNSFWR* 429
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 11095115 11098983 + CsaV3_3G014960.1 Csa03g01496 522401

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g01496 428 PANTHER OS07G0246600 PROTEIN 4 428 - -
Csa03g01496 428 MobiDBLite consensus disorder prediction 205 220 - -
Csa03g01496 428 Coils Coil 25 49 - -
Csa03g01496 428 MobiDBLite consensus disorder prediction 26 55 - -
Csa03g01496 428 Pfam Protein of unknown function (DUF789) 100 420 IPR008507 -
Csa03g01496 428 PANTHER T15D22.8 4 428 - -
Csa03g01496 428 MobiDBLite consensus disorder prediction 24 60 - -
Csa03g01496 428 MobiDBLite consensus disorder prediction 192 220 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g01496 - - - csv:101208769 819.305
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g01496 Csa-Chr3:11095115 Csa05g02637 Csa-Chr5:27454837 8.36E-97 dispersed
Csa03g01496 Csa-Chr3:11095115 Csa05g02062 Csa-Chr5:23923254 2.88E-106 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g115 . . . . . Bpe14g01109 . . . . Cma06g01547 Cma14g01602 Car06g01313 Car14g01421 Sed02g1153 Cpe08g00166 Cpe03g01345 Bhi01g01056 Tan10g1049 Cmetu02g1991 . Hepe05g1405 . Lcy11g1370 . . . . . . . . . Cone7ag0121 Cone4ag0124 . . . . Blo02g00488 . . Bda13g00205 . Bpe13g00681 . Bma06g01484 . . Cmo14g01637 . . . . . . . . . . . . . Cla05g00678 Cam05g0745 Cec05g0751 Cco05g0751 Clacu05g0737 Cmu05g0702 Cre05g0776 . Csa03g01496 Chy06g00734 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007220 1 1 1 1 2 1 2 1 1 1 1 1 1 1 1 2 1 2 2 1 1 0 1 1 1 1 1 3 2 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa03g01496 Csa_Chr03 FPKM 4.947544 5.290267 6.226166 6.543904 12.902004 14.879348 12.80363 13.620562 12.576303 11.174146