Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g01497 ATGTCTACGGCCAGTTCCAGTTCTGTAAGGAAAGCTGGTGAAGCTGTTCCCGACCAGTTTCCAGCCGGCCTTCGTGTTTTGGTTGTGGATGATGATCCAACTTGTCTTATGATCTTGGAGAAGATGCTTCGTATTTGCCGCTATGATGTAACAAATTGTAGTCGAGCAGAGGACGCGCTCTCTCTACTCAGGCAGAACAAAAATGGGTTCGATATTGTTTTGAGTGATGTCCACATGCCAGACATGGATGGATTCAAACTTCTGGAATACATTGGATTGGAAATGGACCTGCCTGTAATTATGATGTCGGTGGATGATGGGAAAAACGTTGTCATGAAGGGAGTGACTCATGGTGCTTGTGACTATTTAATAAAACCTGTTCGAATGGAAGCGCTGAAGAACATATGGCAGCATGTTGTTCGCAAGCGGAAGAATGAATGGAAGGACTTGGAGCAAACTTGTGTTGACGATGTAGATCGGCAGCAAAAAACAAATGAAGATGCAGATTATTCATCATCTGCTAATGAAGGTAGTTGGAGGAACTCAAAGAGGAGAAAGGATGATGTAGAAGATCCGGAGGAGAGGGATGATTCATCAACCCTAAAGAAACCGAGGGTCGTTTGGTCTGTTGAGCTCCATCAACAGTTTGTGGCTGCTGTTAATCAACTAGGAATTGATAAGGCTGTTCCCAAGAAGATTCTGGAGTTGATGAATGTCCCTGGACTCACTAGAGAAAATGTTGCCAGCCACCTTCAGAAATACCGCTTGTATCTGAGAAGGCTAAGTGGAATCACACAACACCAGAGTAATTTAAACAACACATTCATGAGTGCCCAAGATGCATTTGGCCCGCCACTGAACGGCCTTGATCTACAAACTCTTGCTGCTGCTGGTCAACTCCAGCCACAAAGCCTTGCTACACTTCAAGCAGCTGGATTTGGTAGGTCTACAGCAAAATCTGGGATGCCTATGCCTCTTGTGGATCAAAGGAACCACATTTTTAGCTTTGAAAATCCAAAGTTGAGATTCGGTGATGGGCAGCAGCCACATTTGAATGGTAGTAAACCAATGAATCTACTTCATGGAATTCCGACAACTATGGAGCCAAAACAACTTGCTAATCTCCAGCATTCGGCACAATCTCATGGGAACATGACAATGCAAGTTAGCATCCAAGGAGGCCAATCTAGCTCTCAACTAATGCAGACACCTCAACCACAAGCTCGAGCGCAGATCCTTAACGAAAGTACCACAACTAGTGTAACAAGGCTTCCACAAACAATGCAGCCCTCAATTTTGCCTAATGGGACTACTAGTGCAGTTTTAGCAAGGACTGAATTTGGCAATAACAACAGAGGTGGAGGATACAATCTAGTTTCACCAGCTTCAACAATGTTAAATTTCCCTTTGAACCAAACTGCAGAATTGCCTGGTAACAGTTTTCCTCTTCAAAGTACCCCAGGAATGTCAAGCATCGTACCAAAGGGAAGATTTCCAGACGATGTTAACTCGGACATTAAAGGATCTGAAGGTTTTGGGCCAAGCTACGACATGTTTAGGGATCTTCATCCCCAGAAACCCCATGATTGGGACTTGCAGCATGTAGGCGTGACCTTTGATACATCTCAAGGTAGTCTCGACATTCCACCCTCTGCTTTTTCTCACCAAGGGTATGCCTCTAGCCAACAAAATGGACAAAACAGGAACACGTCTACAGCAGGCAAGGCCATGTTCTTGTTGGAAGAAGGAAGTGACAATGGGAATGCACAAAGTATGGGGCAACAACTCAACCCTATTTTCGTTGATGGTTCAGTGAGAGTTAAATCTGAAAGAGCTTCTGATATTAGCAGTCAAACAGACCTTTTCTCTGAACCCTTTGGTCAGGAGGACCTAATGAGTTCACTTTTTAAGCAGCAACAAGGAAGCATAGCAACAGCTGAAAGCGAATTGGAATGGTTGTTTCATCATAATACTCCTGTTTAG 1983 44.18 MSTASSSSVRKAGEAVPDQFPAGLRVLVVDDDPTCLMILEKMLRICRYDVTNCSRAEDALSLLRQNKNGFDIVLSDVHMPDMDGFKLLEYIGLEMDLPVIMMSVDDGKNVVMKGVTHGACDYLIKPVRMEALKNIWQHVVRKRKNEWKDLEQTCVDDVDRQQKTNEDADYSSSANEGSWRNSKRRKDDVEDPEERDDSSTLKKPRVVWSVELHQQFVAAVNQLGIDKAVPKKILELMNVPGLTRENVASHLQKYRLYLRRLSGITQHQSNLNNTFMSAQDAFGPPLNGLDLQTLAAAGQLQPQSLATLQAAGFGRSTAKSGMPMPLVDQRNHIFSFENPKLRFGDGQQPHLNGSKPMNLLHGIPTTMEPKQLANLQHSAQSHGNMTMQVSIQGGQSSSQLMQTPQPQARAQILNESTTTSVTRLPQTMQPSILPNGTTSAVLARTEFGNNNRGGGYNLVSPASTMLNFPLNQTAELPGNSFPLQSTPGMSSIVPKGRFPDDVNSDIKGSEGFGPSYDMFRDLHPQKPHDWDLQHVGVTFDTSQGSLDIPPSAFSHQGYASSQQNGQNRNTSTAGKAMFLLEEGSDNGNAQSMGQQLNPIFVDGSVRVKSERASDISSQTDLFSEPFGQEDLMSSLFKQQQGSIATAESELEWLFHHNTPV* 661
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 11108956 11113621 + CsaV3_3G014970.1 Csa03g01497 522402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g01497 660 PANTHER TWO-COMPONENT RESPONSE REGULATOR 1 631 IPR045279 GO:0009736
Csa03g01497 660 Pfam Response regulator receiver domain 26 134 IPR001789 GO:0000160
Csa03g01497 660 SMART REC_2 24 136 IPR001789 GO:0000160
Csa03g01497 660 Gene3D - 200 262 - -
Csa03g01497 660 SUPERFAMILY Homeodomain-like 200 260 IPR009057 -
Csa03g01497 660 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 203 256 IPR006447 GO:0003677
Csa03g01497 660 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 202 259 IPR017930 -
Csa03g01497 660 Pfam Myb-like DNA-binding domain 205 255 IPR001005 -
Csa03g01497 660 PANTHER TWO-COMPONENT RESPONSE REGULATOR 1 631 - -
Csa03g01497 660 MobiDBLite consensus disorder prediction 158 201 - -
Csa03g01497 660 PIRSF RR_ARR_type-B 5 651 IPR017053 GO:0003677|GO:0003700|GO:0009736
Csa03g01497 660 Gene3D - 24 160 - -
Csa03g01497 660 SUPERFAMILY CheY-like 23 147 IPR011006 -
Csa03g01497 660 CDD REC_typeB_ARR-like 26 140 - -
Csa03g01497 660 MobiDBLite consensus disorder prediction 179 201 - -
Csa03g01497 660 ProSiteProfiles Response regulatory domain profile. 25 140 IPR001789 GO:0000160
Csa03g01497 660 MobiDBLite consensus disorder prediction 551 570 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa03g01497 Csa06g01765 CCT
Csa03g01497 Csa06g01765 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g01497 Csa-Chr3:11108956 Csa04g02646 Csa-Chr4:25830357 3.62E-109 dispersed
Csa05g02056 Csa-Chr5:23876841 Csa03g01497 Csa-Chr3:11108956 1.14E-25 dispersed
Csa05g02649 Csa-Chr5:27510513 Csa03g01497 Csa-Chr3:11108956 9.93E-20 dispersed
Csa06g00585 Csa-Chr6:5010734 Csa03g01497 Csa-Chr3:11108956 7.94E-42 dispersed
Csa01g00568 Csa-Chr1:3658056 Csa03g01497 Csa-Chr3:11108956 7.37E-19 transposed
Csa02g01797 Csa-Chr2:17338517 Csa03g01497 Csa-Chr3:11108956 8.55E-98 transposed
Csa03g01497 Csa-Chr3:11108956 Csa06g01765 Csa-Chr6:15531730 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31207 PF00072 Response_reg 1.30E-22 CL0304 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g01497 - K14491 csv:101209013 1316.98