Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g01498 ATGGCTTTCCCCCATCTCATCTTCTTCCTCTTCTTTACATCATCCATACCCTTTTCCATTTCTCAGCCAACTGACCAAGCTCCACCTCCCGCCGCCGCTTCCTGCAATCATATCTTCTTGTCTTACTCTTTCGATCAAGGTACCAAGCTTCCCCCAAATAGCACCGATCTCGCTCGTCAGCCCTACCGATTTGAGTCTACTCTAACCGTTCTCAACAACGGCCTTACGGAGCTCAAGTCTTGGAAGGTTTTTGTGGGCTTTCAACACGATGAGTTCTTGGTCTCCGCCTCCGGTGCTGTCCTTGCCGATGGTAATTCCTTCCCTGGTAATGTTGGGAATGGGACTGTCTTCGCTGGTTTTCCGATGACCGACTTGAAGACGGCCATTCAAACTGCTGGGGATATCACTCAGATGCAAGTCCAAGTCAAGTTACTTGGGACCCAATTTGGGGTTGCCCCTCCGAGTAGTCCGATGCCTTCCAATATTTCCCTTGCCAATGATGGATATCTCTGCCCCAAGCCAACTCTACAAGGAAAGAGTGAGATGCACGTCTGTTGCATACCCGATAAACGCGTGAAAACAAATATCACAACTCAAGAGTTCTTGCCTCGTCAAAAGGGTGATCTAACGATCATGTATGATGTAACAAGGACATATGATTCAAGCTACTGGGCGCAAGTTACAATTTCTAACCATAATCCTCTTGGACGTCTTGACTATTGGAAATTGAACTGGGATTGGATGAGGGATGAGTTTATCTTTTCAATGAAAGGGGCTTATCCTTCGGTTGTTGATTCTACCGACTGCATTTTTGGTAGACAAGGCACTTATTATCGGGATTTAGACTTTTCCAATGTATTAAGTTGTGAAAGAAGGCCAACTATCGTTGATTTACCTCCAACCAAGGCCAACGATACCACTCTTGGGTTGATCCCTTTCTGCTGTCGAAACGGGACAATTTTGCCATCTCATATGGACGCGAGCAAGTCAATTTCTGCATTTCAGATGCAAGTGTTTAAAATGCCACCGGATCTTAACAGATCCCAGATTACACCACCTCAGAATTGGCAGATCAGTGGCATTCTTAACCCCACATATAAATGTGGCCAGCCAGTGAGAGTAAGTCCTAGTGAATTCCCTGATTCGAGCGGTCTACCACTGAATTCGACTGCAGTAGCCAGTTGGCAGGTTGTTTGCAATATAACACATGCCAAGGATGACACACCAAAGTGCTGTGTTTCGTTTTCATCTTACTACAATGATTCCGTCATCCCGTGCAGAACGTGCGCATGTGGATGCTCACAAAACTCAGCTCGTACATGTAATGCAACCTCCCCTGCAATGCTCCTCCCACCTGAAGCCCTTCTTGTTCCTTTTGAGAATAGGACTGCCATGGCTGTTGCTTGGGCTGGTCTTAAACATTACCCATCTCCTAACCCGATGCCTTGTGCGGATAACTGCGGTGTCAGCATCAATTGGCATCTGTATACTGATTATAGAGATGGATGGAGTGCAAGGATCACTCTCTTCAACTGGGGCGAAGTGAATTTTGCAGATTGGTTTGCTGCAGTTCAGATGAACAAAGCAGCACCTGGTTTCCAGGCAATGTACTCATTCAATGCAACCACCTTGGAATTGGATGGTTTGAACAATACCATCTTTATGCAGGGTCATCCTGGACTTAACTATCTTGTGGGAGAAACAGACGGGCCGAACCCAGTGAAGGATCCACGAGTACCTGGAAAACAGCAATCTGTGATCTCATTTACAAAGAAGAACATACAAGGCCTTAACATGGCCGCAGGAGATGGGTTCCCCACAAAAGTGTTCTTCAATGGGGAGGAGTGCTTGGTTCCGAAAATGTTCCCAGCCAACAACAGCCGAAAGAACTTAGCTTCGTTCATTCCAAGCATCCTAATGCTAGTACTTGTGTTCATGTTCATTCAACAATAG 1953 46.19 MAFPHLIFFLFFTSSIPFSISQPTDQAPPPAAASCNHIFLSYSFDQGTKLPPNSTDLARQPYRFESTLTVLNNGLTELKSWKVFVGFQHDEFLVSASGAVLADGNSFPGNVGNGTVFAGFPMTDLKTAIQTAGDITQMQVQVKLLGTQFGVAPPSSPMPSNISLANDGYLCPKPTLQGKSEMHVCCIPDKRVKTNITTQEFLPRQKGDLTIMYDVTRTYDSSYWAQVTISNHNPLGRLDYWKLNWDWMRDEFIFSMKGAYPSVVDSTDCIFGRQGTYYRDLDFSNVLSCERRPTIVDLPPTKANDTTLGLIPFCCRNGTILPSHMDASKSISAFQMQVFKMPPDLNRSQITPPQNWQISGILNPTYKCGQPVRVSPSEFPDSSGLPLNSTAVASWQVVCNITHAKDDTPKCCVSFSSYYNDSVIPCRTCACGCSQNSARTCNATSPAMLLPPEALLVPFENRTAMAVAWAGLKHYPSPNPMPCADNCGVSINWHLYTDYRDGWSARITLFNWGEVNFADWFAAVQMNKAAPGFQAMYSFNATTLELDGLNNTIFMQGHPGLNYLVGETDGPNPVKDPRVPGKQQSVISFTKKNIQGLNMAAGDGFPTKVFFNGEECLVPKMFPANNSRKNLASFIPSILMLVLVFMFIQQ* 651
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 11114152 11117541 - CsaV3_3G014980.1 Csa03g01498 522403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g01498 650 Pfam COBRA-like protein 223 402 IPR006918 GO:0010215|GO:0031225
Csa03g01498 650 PANTHER COBRA-LIKE PROTEIN 7 8 648 - -
Csa03g01498 650 PANTHER COBRA-LIKE PROTEIN 7 8 648 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g01498 Csa-Chr3:11114152 Csa03g02318 Csa-Chr3:20725839 0 dispersed
Csa03g01498 Csa-Chr3:11114152 Csa01g00618 Csa-Chr1:3946497 5.94E-39 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g01498 - - csv:101209258 1352.81