Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g01500 ATGATGATGGATCCGAGTGATAGAGGATCCGAGTCGGAGGACATGTCCGGGAAGAACTCTAGCGGGGTTTCGTCGGAGGAGAGTCAAGTGAATGAGCAAAACAAGAAGACTTGTGCCGACTGTGGTACTTCGAAAACCCCTTTATGGAGAGGCGGCCCGGCTGGTCCTAAGTCTCTTTGCAATGCGTGTGGGATCAGAAGTAGGAAGAAGAGAAGAGCGATTTTAGGGTTGAGCAAAGGAGTTGTTGAAGATAAGAAGAACAAAAAGAGCAGTAATATAAGTAGTAATAGTAAGTTCAGAGATAGTTTGAAACAAAGGCTTTTGGCTTTGGGTAGAGAAGTTTTGATGCAGAGATCTACTGTTGAAAGACAAAGGAAGAAGTTAGGAGAAGAAGAACAAGCTGCTGTGCTTCTGATGGCTTTATCTTGTGGCTCTGTTTATGCTTGA 447 44.3 MMMDPSDRGSESEDMSGKNSSGVSSEESQVNEQNKKTCADCGTSKTPLWRGGPAGPKSLCNACGIRSRKKRRAILGLSKGVVEDKKNKKSSNISSNSKFRDSLKQRLLALGREVLMQRSTVERQRKKLGEEEQAAVLLMALSCGSVYA* 149
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 11133003 11134641 - CsaV3_3G015000.1 Csa03g01500 522405

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g01500 148 Gene3D - 32 131 IPR013088 GO:0006355|GO:0008270
Csa03g01500 148 ProSiteProfiles GATA-type zinc finger domain profile. 32 68 IPR000679 GO:0006355|GO:0043565
Csa03g01500 148 PANTHER OS01G0976800 PROTEIN 2 148 - -
Csa03g01500 148 PANTHER OS01G0976800 PROTEIN 2 148 - -
Csa03g01500 148 CDD ZnF_GATA 37 72 IPR000679 GO:0006355|GO:0043565
Csa03g01500 148 MobiDBLite consensus disorder prediction 1 53 - -
Csa03g01500 148 SMART GATA_3 32 96 IPR000679 GO:0006355|GO:0043565
Csa03g01500 148 Pfam GATA zinc finger 38 72 IPR000679 GO:0006355|GO:0043565
Csa03g01500 148 MobiDBLite consensus disorder prediction 15 41 - -
Csa03g01500 148 ProSitePatterns GATA-type zinc finger domain. 38 63 IPR000679 GO:0006355|GO:0043565
Csa03g01500 148 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 31 72 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g01500 - - - csv:101209503 277.715
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g01500 Csa-Chr3:11133003 Csa04g02537 Csa-Chr4:25074016 2.48E-16 dispersed
Csa06g03242 Csa-Chr6:27359745 Csa03g01500 Csa-Chr3:11133003 2.58E-15 transposed
Csa07g01887 Csa-Chr7:18809285 Csa03g01500 Csa-Chr3:11133003 3.56E-22 transposed
Csa01g02735 Csa-Chr1:24234019 Csa03g01500 Csa-Chr3:11133003 8.38E-18 wgd
Csa03g01500 Csa-Chr3:11133003 Csa06g01763 Csa-Chr6:15519074 2.44E-48 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g110 Blo01g00058 . . Bda08g00307 Bpe04g01105 Bpe14g01108 Bma04g01139 . . Cmo17g00342 Cma06g01551 Cma14g01600 Car06g01316 Car14g01415 Sed02g1148 Cpe08g00163 Cpe03g01341 Bhi01g01062 Tan10g1053 Cmetu06g2475 Lac11g0907 Hepe05g1401 . . Cla06g00446 Cam06g0474 Cec06g0479 Cco06g0477 Clacu06g0460 Cmu06g0461 Cre06g1236 . . . . . . Chy11g01548 Cme06g00767 Blo02g00487 . Bda11g00513 Bda13g00207 Bpe05g00821 Bpe13g00684 . Bma06g01481 Sed09g0269 . Cmo14g01633 . Cma17g00353 . Car17g00324 Cpe12g00302 . Bhi12g01901 Tan06g2729 Cmetu11g0446 Lac11g0907 Hepe03g0066 . Lcy12g0779 Cla05g00682 Cam05g0749 Cec05g0755 Cco05g0755 Clacu05g0741 Cmu05g0706 Cre05g0780 Lsi09g01468 Csa03g01500 Chy06g00738 Cme11g02058
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001736 5 2 2 2 4 2 3 2 2 2 2 2 2 2 2 2 2 2 3 2 2 2 2 2 2 2 2 4 2 1 68
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31208 PF00320 GATA 8.90E-17 CL0167 Csa TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa03g01500 Csa_Chr03 FPKM 10.458388 11.98845 12.648054 13.174523 10.738308 13.478074 11.588892 17.803976 19.391014 18.588772