Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g01511 ATGACTAATATGGCTCTTCGAAAGTTTGTTTGTGGTTCTACACCTTCAATTAACCTGAAACATTCAAGTTTTCCCATTAAGTTGCACGAACAAACTCAATTTGAAGAACCTGAGACAAATCGGACGTTGGAGCCTGATGTAGAAATTGACCCCAGAGAAGTATATTTTCTTATTATGCACTTTCTTTCATCTGGGCCATGTCTTAGAACTTGTGGGCTTCTGTGGGATGAGCTTTTTGAACACCAGCTTTTACCCCGACGATATCATGCATGGTATTCAAGAAATGGGGTGCATAGTGGCCATGAAAATGACGATGGCTTGTCATTTCCATTAAGTTACCAACACTTAGTGGAGAGGTATCCCCATGTCGATAAGAATCACCTGATAAAACTTTTGAAGCAATTGATACTTAACAAGGCCCCTCCATCTAGAGGTATGAGTGGTGGAATTGCTCCAAATGCTGCTGATGTGCCTACATTATTGGGAACGGGCACATTTTCACTTTTGAGCTATGATAAACATGAAGGAGTTAGCAAACCAAGTGGTCCCCCAGCACATATGCGTTGGCCTCATATGAAAGCTGATTCTGTTCGTGGATTAAGTTTGAGAGAAATTGGAGGTGGTTTCTCCCGACATCAACGTGCGCCTTCTGTACGTGCAGCATGTTATGCAATTGCTAAGCCATCGACAATGGTTCAGAAAATGCAAAACATAAAGAGGCTACGGGGGCATAGGAATGCTGTCTATTGTGCAATTTTTGACCGTGCGGGAAGGTACGTTATAACTGGGTCAGATGATCGCCTTGTCAAGATTTGGTCAATGGAAACTGCATATTGCTTGGCAAGCTGTAGAGGACATGAGGGTGATATCACTGACCTTGCTGTTAGCTCTAACAATGCTGTGGTGGCATCATCTTCAAATGATTTTGTTATCCGTGTTTGGCGTTTGCCTGATGGGCTACCAATTTCAGTCTTACGAGGACATACTGGTGCTGTTACTGCAATTGCCTTTAGTCCTCGTGCTGCATACCAGCTTCTTTCATCGTCAGATGATGGAACATGTAGGATATGGGATGCTCGGAGCTCTTCTCAGAGTGCTCCTCGGATTTATGTTCCAAAACCTTTGGACTCTGTGACTGCAAGAAATGGTGGATCTTCTGTGAGTACTCTTCCTCAGAGCCATCAAATATTTTGCTGTGCATTTAATGCATGTGGAACTATTTTTGTTACTGGTAGTTCTGACACTCTGGCAAGGGTTTGGAGTGCCTGTAAAGGAAACAATGATAACCCAGACCAACCAAATCATGAGATTGATGTGTTAGCTGGCCACGAGAATGATGTCAATTATGTGCAATTCAGTGGATGTGCAGTAGCATCGAGATTTACTACTACCGATGTTGCGAAGGAAGACAATGTTCACAAGTTCAAAAACTCCTGGTTTACTTATGACAATATAGTTACTTGTTCTCGTGATGGAAGTGCAATTATTTGGGTTCCAAGATCACGGAGGTCACATGGGAAGGTTGGTCGCTGGACCCGTGCATACCATTTAAAAGTGCCACCTCCACCCATGCCCCCGCAACCTGCCCGAGGCGGCCCTCGCCAGAGGATTCTTCCTACTCCTCGTGGTGTAAATATGATAATTTGGAGCCTAGATAATCGCTTTGTCCTAGCAGCTATAATGGATTGTAGAATTTGTGTTTGGAATGCTTCTGATGGCAGCTTAGTTCACTCTTTGACAGGTCATACTGAATCTACATATGTACTCGATGTTCATCCTTTCAATCCGAGAATTGCTATGAGTGCTGGATATGATGGAAAGACGATAGTTTGGGATATTTGGGAAGGCACACCAATTCGGATATATGAAATTTCTCACTTCAAACTGGTTGATGGGAAGTTTTCATCAGACGGGACATCAATTATACTTTCAGATGATGTTGGACAGCTATATATATTAAGCACAGGGCAGGGAGAATCCCAACAGGATGCCAAGTATGATCAGTTCTTTCTTGGTGACTATCGCCCACTTATTCAGGATCCTTCCGGCAATGTAATTGACCAGGAAACCCAACTCAGTACTTACAGAAGGAATTTGCAAGATCTTCTTTCCGACTCAGGCATGATACCTTATCCAGAACCTTATCAGACTGCATACCAGCAAAGACGTTTAGGTGCTATGAGTGTTGAATGGCGTCCCTCTTCTCTAAAACTTTCTGTTGGGCCCGACTTCAATCTCGACCCCGATTACCAATTGCTGCCATTGGCAGACTTGGACATGTTGGTTGAACCATTGCCTGACATTGTGGATGCAATGGATTGGGGACCAGAAAATGAAGTGCAAAGCGAGGATACTGATTCAGAATACAACGTCACTGAAGATTATTCTACTGGTGGGGAGCAGAGAAGTCTAAATTCGAATTGCTCAACCGATCCAGAATGCAGCTCTGAAGACACAGGGATTGACGATGCTCCTGCCGATGGTCTTCGAAGATCAAAAAGGAAAAAACAAAAGGCAGACATGGAAGTCATGACTTCTTCAGGAAGGCGTGTTAAAAGACGAAATATGGATGAGTATGAAGGTGATGCTATTAGGAGTTCCAGGAATCGGAAGTCAAAGTCTGGCCATAAGCCTTCCAAAAAGAAATCAGCATCCAAGTCCTTAAGACCTCAAAGAGCAGCAGCACGTAATGCTCGCAATTGGATATCATCATTTAAGGGAAAATCTACAGATGGAGAAGAAGAATATGAGTCGGGAGGTGATTGCTCAGAAAGTGAATCTACATTAGAAGATTCAGACATTGAGAGCGATGAATACGAAAGGTCATTGCAAAACAGAATTAAGCATTCAAAAGGGAAAGAAGTATTCCTATATGGAGCCGAGGAGATAACAAAATCTCTTGATGTTCCTGAATCTCGTGTAGATGCCGGAAACAGAAAGAAGCTGATCGTTAAGTTCTCCGTTAAGAATCTAAATAAGGGTGATCCTCCTCTAAGCACAGCACTTTCTTGTTCCAACACAGCTGATGTGGCTAGCTCTTCATCAAGATCACCAAAGGAAGTTATTGAAACCAGTCAGAATCTTGTGAGATCTGAGAGGCAATTTGTAAATATTGATGGAAATTCTGATCTGACTGAGGTCTACACAAACGGAAACATAAGATGGGGTGGGTCCAGGGTTCGTTCATCCAAGCGCATAAGATTTGGGGATACCATGCCTTCTGATGCTTATGCAGTATCTAGTTCACTTCCCAATGGCGATCATAATGAAAATGAGAATGCAGTCCATGAATATTTAGAACGAGAAAATCATTTTGGTGCACCATCCCCCCATGCAAAGGTAGTGAATTTTTGTTCAGATGAAATGGACACAGTATCTCCCACAAAATTGAAGGAGGAGGATGACAATGCTTCTGGGCATTCTCAGGAGATGGTTAATGGTGGAGAGCTTAAATGCGTTGGCAACAGCAAGTCATGTGACCATGATGATTCAAATAATTTGATCATGTTTTCTTCTGACGCAACCACCACTTCAATACAAAATGGGACTCATGCTCCTGAGCAAACTGAAAATACTGCACCAATGCGTAAAAAGATAAGGTTCAAGAGTATTTCCTTGGATCCTGAACATTCTTTGAAGCATAAGATAGAATCCTTGGATGAAAGTTCGAAGAATGATGAATACAATACAGTATCTGGAAGCCCTCAGCATCCAAATGGGCTGAAAGATAGTGTCACGAATGAAACTTATTCTGATCTTAGAAATAATTGCCCAGAAGATATGGACATAGCAGTTGATGAAAAGCCAGTTTCAACCTTATGCAACTCATCAGAGTTGCAAGCAGTTGAGACAAACAAAATGTACACTGCAGTTTATACAAGATCCAAGTCAAACAAAGGAAAGAGCAATATAGATAGCAATGGTTGTGCCTCAGGAGAACATGCCTTGGGCAACAGTAGTCTACCTGCTGATGCAGACAGTCACAAAATTATGCTCCGTAAGGCACGGTCTATAAGGTTTAAGGAGTCCTCTTATGATCTAAATAATGTGGGTGATGATCTAAAGTCAGACGAGGATCAAGAACTTGAACAGAAATCAAGACGCTCTGGAAATTCTTCTGCAGACAGATCCCATATTCCAAGTGAAGAGTGGGGATCAAGCTCAAGGATGACAGTTGGATCCAGATCCACTCGAAACAGAAGGGGTACTCTGATTCAAGACATAAATCCAGTAGACAGAAGAAAATCAGTTCAGTATGCCAGAAAAGGATCGTGGTTAATGATGCCTGCACATGAGGGTGGCTCCAGATATATTCCCCAACTTGGAGATGAAGTTGCGTATCTGAGGCAGGGCCATCAGGAATACATACAACACTGTTGTGCAAATTACTGCCACATAAAAGACATGGGACCTTGGACATCAAACCGAGGAACCATACGAGCTGTTGAGTTCTGTAAGGTTGTGGAGCTTGTTTATTCAACTTCTGCAGGTTCTGGAGATAGTTGCTGTAAAATGCTACTCAAGTTCATAGATCCATCTTCCCAAGTATACCTTCAATCGTTCAAGTTAACTCTTCCTGAGTTGACTAGCTTCCCTGACTTCTTAGTTGAAAAATCTCGGTTCGAAGCAGCAATGCAGAGGAATTGGACGTTCAGGGACAAGTGCAAAGTTTGGTGGAAAAATGACGTTGGAGTAGATGGTAGTTGGTGGGATGGTCGAATTATCTCTGTGCAGGCAAAATCTTCAGAGTTCCCAGAAAGTCCTTGGGAGAGGTACACAATTAGGTATAGGAGTGATCCTGCTGAACCACATTTACATAGTCCTTGGGAGCTCTATGATACTATTATTCAGTGGGAACAGCCTCGAATAGATGATGAAACCAAATCAAAGTTGTTAATGGCCATTGATAAATTAATGTCACCTTCTATGCAGGGTCGTTTTGGGATTCAAGATTTGATGATTCTCTCACGAAAGACACAATACAAGAACAGGTTTCCTGTGCCATTGTGCCTTGAGATAATCCAGGAAAGACTACAGAATGATTACTACCGAAGCTTGGAAGCTTTGAAGCATGACTTCATGGTAATGTTATCGAATTTTGAGTCGTTCGTGGCAAAGAATGAAGACATGTCAAAGAAAATTAGACGATTGTCAGACTGGTTTGATCGCAACATATCACCTCTATAG 5187 42.38 MTNMALRKFVCGSTPSINLKHSSFPIKLHEQTQFEEPETNRTLEPDVEIDPREVYFLIMHFLSSGPCLRTCGLLWDELFEHQLLPRRYHAWYSRNGVHSGHENDDGLSFPLSYQHLVERYPHVDKNHLIKLLKQLILNKAPPSRGMSGGIAPNAADVPTLLGTGTFSLLSYDKHEGVSKPSGPPAHMRWPHMKADSVRGLSLREIGGGFSRHQRAPSVRAACYAIAKPSTMVQKMQNIKRLRGHRNAVYCAIFDRAGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNAVVASSSNDFVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRAAYQLLSSSDDGTCRIWDARSSSQSAPRIYVPKPLDSVTARNGGSSVSTLPQSHQIFCCAFNACGTIFVTGSSDTLARVWSACKGNNDNPDQPNHEIDVLAGHENDVNYVQFSGCAVASRFTTTDVAKEDNVHKFKNSWFTYDNIVTCSRDGSAIIWVPRSRRSHGKVGRWTRAYHLKVPPPPMPPQPARGGPRQRILPTPRGVNMIIWSLDNRFVLAAIMDCRICVWNASDGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGKTIVWDIWEGTPIRIYEISHFKLVDGKFSSDGTSIILSDDVGQLYILSTGQGESQQDAKYDQFFLGDYRPLIQDPSGNVIDQETQLSTYRRNLQDLLSDSGMIPYPEPYQTAYQQRRLGAMSVEWRPSSLKLSVGPDFNLDPDYQLLPLADLDMLVEPLPDIVDAMDWGPENEVQSEDTDSEYNVTEDYSTGGEQRSLNSNCSTDPECSSEDTGIDDAPADGLRRSKRKKQKADMEVMTSSGRRVKRRNMDEYEGDAIRSSRNRKSKSGHKPSKKKSASKSLRPQRAAARNARNWISSFKGKSTDGEEEYESGGDCSESESTLEDSDIESDEYERSLQNRIKHSKGKEVFLYGAEEITKSLDVPESRVDAGNRKKLIVKFSVKNLNKGDPPLSTALSCSNTADVASSSSRSPKEVIETSQNLVRSERQFVNIDGNSDLTEVYTNGNIRWGGSRVRSSKRIRFGDTMPSDAYAVSSSLPNGDHNENENAVHEYLERENHFGAPSPHAKVVNFCSDEMDTVSPTKLKEEDDNASGHSQEMVNGGELKCVGNSKSCDHDDSNNLIMFSSDATTTSIQNGTHAPEQTENTAPMRKKIRFKSISLDPEHSLKHKIESLDESSKNDEYNTVSGSPQHPNGLKDSVTNETYSDLRNNCPEDMDIAVDEKPVSTLCNSSELQAVETNKMYTAVYTRSKSNKGKSNIDSNGCASGEHALGNSSLPADADSHKIMLRKARSIRFKESSYDLNNVGDDLKSDEDQELEQKSRRSGNSSADRSHIPSEEWGSSSRMTVGSRSTRNRRGTLIQDINPVDRRKSVQYARKGSWLMMPAHEGGSRYIPQLGDEVAYLRQGHQEYIQHCCANYCHIKDMGPWTSNRGTIRAVEFCKVVELVYSTSAGSGDSCCKMLLKFIDPSSQVYLQSFKLTLPELTSFPDFLVEKSRFEAAMQRNWTFRDKCKVWWKNDVGVDGSWWDGRIISVQAKSSEFPESPWERYTIRYRSDPAEPHLHSPWELYDTIIQWEQPRIDDETKSKLLMAIDKLMSPSMQGRFGIQDLMILSRKTQYKNRFPVPLCLEIIQERLQNDYYRSLEALKHDFMVMLSNFESFVAKNEDMSKKIRRLSDWFDRNISPL* 1729
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 11205113 11228093 - CsaV3_3G015110.1 Csa03g01511 522416

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g01511 1728 MobiDBLite consensus disorder prediction 1225 1253 - -
Csa03g01511 1728 MobiDBLite consensus disorder prediction 1347 1404 - -
Csa03g01511 1728 SUPERFAMILY WD40 repeat-like 232 655 IPR036322 GO:0005515
Csa03g01511 1728 MobiDBLite consensus disorder prediction 823 869 - -
Csa03g01511 1728 PANTHER WD REPEAT DOMAIN 9 42 1727 - -
Csa03g01511 1728 ProSitePatterns Trp-Asp (WD) repeats signature. 599 613 IPR019775 -
Csa03g01511 1728 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 283 316 - -
Csa03g01511 1728 Gene3D - 461 669 IPR015943 GO:0005515
Csa03g01511 1728 ProSiteProfiles Trp-Asp (WD) repeats profile. 241 282 IPR001680 GO:0005515
Csa03g01511 1728 SMART bromo_6 1624 1727 IPR001487 GO:0005515
Csa03g01511 1728 MobiDBLite consensus disorder prediction 870 887 - -
Csa03g01511 1728 SMART WD40_4 318 358 IPR001680 GO:0005515
Csa03g01511 1728 SMART WD40_4 433 498 IPR001680 GO:0005515
Csa03g01511 1728 SMART WD40_4 276 315 IPR001680 GO:0005515
Csa03g01511 1728 SMART WD40_4 572 612 IPR001680 GO:0005515
Csa03g01511 1728 SMART WD40_4 531 569 IPR001680 GO:0005515
Csa03g01511 1728 SMART WD40_4 383 421 IPR001680 GO:0005515
Csa03g01511 1728 SMART WD40_4 234 273 IPR001680 GO:0005515
Csa03g01511 1728 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 241 276 - -
Csa03g01511 1728 CDD WD40 237 612 - -
Csa03g01511 1728 ProSiteProfiles Trp-Asp (WD) repeats profile. 283 324 IPR001680 GO:0005515
Csa03g01511 1728 MobiDBLite consensus disorder prediction 1347 1372 - -
Csa03g01511 1728 Pfam Bromodomain 1659 1713 IPR001487 GO:0005515
Csa03g01511 1728 CDD Bromo_WDR9_I_like 1604 1726 - -
Csa03g01511 1728 Gene3D - 1620 1728 IPR036427 GO:0005515
Csa03g01511 1728 ProSitePatterns Trp-Asp (WD) repeats signature. 345 359 IPR019775 -
Csa03g01511 1728 Gene3D - 390 460 IPR015943 GO:0005515
Csa03g01511 1728 PANTHER PH-INTERACTING PROTEIN-LIKE ISOFORM X1 42 1727 - -
Csa03g01511 1728 MobiDBLite consensus disorder prediction 791 815 - -
Csa03g01511 1728 MobiDBLite consensus disorder prediction 777 945 - -
Csa03g01511 1728 ProSiteProfiles Trp-Asp (WD) repeats profile. 325 367 IPR001680 GO:0005515
Csa03g01511 1728 Pfam WD domain, G-beta repeat 573 612 IPR001680 GO:0005515
Csa03g01511 1728 Pfam WD domain, G-beta repeat 236 273 IPR001680 GO:0005515
Csa03g01511 1728 Pfam WD domain, G-beta repeat 393 421 IPR001680 GO:0005515
Csa03g01511 1728 Pfam WD domain, G-beta repeat 321 358 IPR001680 GO:0005515
Csa03g01511 1728 Pfam WD domain, G-beta repeat 279 314 IPR001680 GO:0005515
Csa03g01511 1728 MobiDBLite consensus disorder prediction 1373 1404 - -
Csa03g01511 1728 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 325 361 - -
Csa03g01511 1728 MobiDBLite consensus disorder prediction 1218 1253 - -
Csa03g01511 1728 MobiDBLite consensus disorder prediction 916 937 - -
Csa03g01511 1728 Gene3D - 213 389 IPR015943 GO:0005515
Csa03g01511 1728 SUPERFAMILY Bromodomain 1659 1726 IPR036427 GO:0005515
Csa03g01511 1728 ProSiteProfiles Trp-Asp (WD) repeats profile. 579 621 IPR001680 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g01511 K11797 PHIP, DCAF14; PH-interacting protein - csv:101214610 3452.14
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g01511 Csa-Chr3:11205113 Csa03g02893 Csa-Chr3:27636372 4.40E-06 dispersed
Csa03g01511 Csa-Chr3:11205113 Csa07g01715 Csa-Chr7:17626903 8.61E-12 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g84 . . . . . . . . . . Cma06g01559 Cma14g01594 Car06g01323 Car14g01407 Sed12g0779 Cpe08g00155 Cpe03g01333 Bhi01g01082 Tan10g1069 Cmetu06g1713 . Hepe05g1390 . Lcy11g1346 . . . . . . . . . Cone7ag0105 Cone4ag0108 Lsi05g01586 . . Cme06g00781 Blo02g00479 Blo07g00153 Bda11g00507 Bda13g00214 . Bpe13g00691 Bma02g00927 . . Cmo06g01556 Cmo14g01626 . . . . . . . . . . . . . Cla05g00697 Cam05g0765 Cec05g0774 . . Cmu05g0720 . . Csa03g01511 Chy06g00747 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004915 2 1 2 1 1 1 2 1 1 1 1 1 3 1 1 2 1 4 2 1 1 1 1 1 1 1 1 1 1 2 41