Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g01519 ATGGTTTCCAGTAATCGAGCAACTCATTCGCATCAACAACAAGCGCAGTCTTCGAACACGAATACCAGCAATTTGCGATCTCATCGTACAGATTCCATCAGCAAAGCTATAGCGCAGTACACAGTTGATGCTCGTCTTCACGCGGTGTTCGAGCAGTCAGGTGAGTCTGGAAAATCTTTTGACTACTCACAATCTATAAAAACTTCGACTCAATCTGTGCCGGAGCAGCAAATTACTGCTTATTTGTCGAAGATTCAAAGGGGTGGTCATATCCAGCCCTTTGGATGTATGATAGCTATTGAAGAGGCTAGTTTTCGAGTTATTGCGTACAGTGAAAACGCTAGGGAATTGCTCGGTCTGACGCCTCAATCAGTGCCGAGTCTTGAAAAGCCTGAGATCCTTACAATTGGGACTGATGTACGCAACTTGTTCACTTCCAATAGTGCAATTCTACTAGAGAAGGCGTTTGGGGCTCGAGAAATCACTTTGTTGAACCCAGTTTGGATTCATTCCAAGAATTCTGGGAAGCCCTTCTACGCAATTTTGCATAGGATTGATGTGGGAATTGTGATTGATTTGGAGCCTGCAAGAACGGAGGATCCTGCTCTTTCTATTGCTGGAGCAGTACAATCGCAGAAGCTTGCGGTACGTGCAATTTCTCAGTTACAAGCACTCCCTGGCGGAGATATTAAACTGTTGTGTGATACTGTGGTTGAGAGTGTTAGGGAGCTTACTGGGTATGATAGAGTTATGGTGTACAAGTTTCATGAGGATGAGCATGGTGAGGTTGTAGCTGAAAGTAAGAGGCCTGACTTAGAGCCATACATTGGATTGCATTATCCTTCTACTGATATTCCTCAGGCATCAAGGTTTTTGTTTAAGCAAAACCGCGTTAGGATGATTGTTGATTGCCATGCCTCTCCAGTTCGTGTAATTCAGGATGCAGGGCTTATGCAACATCTCTGCTTGGTGGGTTCAACTCTTCGTGCACCCCATGGTTGCCATGCCCAGTATATGGCCAATATGGGCTCTATTGCTTCGTTAGCAATGGCAGTTGTTATCAACGGTAATGATGATGAAGCTATTGGTGGACGAAACTCAACAAGGCTTTGGGGTTTGGTTGTATGTCATCATACTTCTGCTCGGTGCATTCCGTTCCCACTCCGGTATGCGTGTGAGTTTCTAATGCAAGCCTTTGGGCTTCAACTGAATATGGAATTGCAGTTGGCCTCACAGTTGTCTGAGAAACATGTTTTGAGGACTCAAACTCTCTTGTGTGACATGCTTCTTCGTGATTCCCCAGCTGGCATTGTTACTCAGAGTCCAAGCATCATGGACCTAGTAAAGTGTGATGGGGCAGCTCTTTACTATCAAGGGAAATATTACCCTCTGGGTGTGACGCCAACTGAGGCCCAAATAAAGGATATTGTGGAGTGGTTGTTGGCTTTCCATGGAGATTCAACTGGTTTAAGTACAGATAGCTTGGCTGATGCTGGATATCCAGGGGCAGCCTTGCTGGGTGATGCAGTTTGTGGAATGGCTGTTGCTTACATCACCAAAAAGGATTTTCTATTTTGGTTCCGATCTCATACAGCAAAAGAGATCAAATGGGGTGGTGCAAAGCATCATCCGGAGGATAAGGATGATGGTCAAAGAATGCATCCGCGTTCTTCATTCAAGGCATTCTTGGAAGTGGTAAAATCCCGTAGTTTACCATGGGAGAACGCAGAAATGGATGCAATTCACTCATTGCAGCTTATTCTACGTGATTCATTTAAGAACGATGTGGCAATCAATTCAAAGGCAGTTGTGCACCCTCATCTAGGGGATCTTGACTTGCAGGGGATTGATGAGCTCAGCTCGGTTGCAAGAGAAATGGTCAGGTTGATTGAGACTGCAACTGCTCCTATCTTTGCTGTAGATGCTGATGGTCGTATCAATGGATGGAATGCTAAGATAGCTGAGTTGACTGGGCTTGCGGTTGAGGAGGCTATGGGGAAATCCTTGGTTCGTGATCTTGTGTACAAAGAGTCTGAAGAAACAGTTGACAGACTTGTTTCCCGTGCTTTAAAAGGTGAAGAAGATAAAAATATAGAGATAAAAATGAGGACATTTGGGCCAGAAGAAGATCAAAGGACGCCATTTTTTGTTGTCGTAAATGCTTGCTCTAGCAGGGACTACACTGATAATATAGTTGGCGTTTGTTTTGTTGGTCAAGATGTTACCTGCCAAAAAGTGTTCATGGACAAATTTGTAAGCATACAAGGTGATTATAAAGCAATTATTCATAGCCCAAATCCTCTTATCCCTCCAATATTTGCTTCAGACGACAATACATGTTGCTCGGAATGGAATACTGCCATGGAAAAGCTCACTGGATGGTCCAGAGAGGACATAATTGGAAAAATGCTAGTAGGAGAGGTTTTTGGAAGTTGTTGTCGACTGAAGGGTCCAGATGCATTGACCAAATTTATGATTGTCCTGCACAGTGCAATTGGAGGGCAGGATAATGAAAAATACCCCTTTTCTTTTTATGACAAAAAGGGGAAATATGTGCAAGCTCTCTTAACAGCAAATAAGAGGATGAATATGGAGGGTCAGATTGTTGGAGCTTTCTGCTTCTTACAGATAGCAAGTCCAGAATTGCAACAAACTCTTAGAATGCAGAGGCAACAGGAGAAGAACCGGTTTGCAAGGATGAAAGAGCTGGCTTACATTTGCCAGGAAGTGAAGAGTCCTTTGAGTGGTATACGCTTTACTAACTCACTTTTGGAGGCTACAGATTTGAGTGAAGATCAAAAGCAGTTCCTTGAGACCAGTGTTGCTTGTGAAAAACAAATGCTAAAGATTATTGAGGATATGGACTTGGAGTGTATTGATGATGGCACAATGGAGCTTGAGAAGGGGGAGTTCTTATTGGGAAGTGTTATTAATGCTGTTGTTAGTCAAGTGATGATACTACTCAGAGAAAGAAGCTTACAACTGATTCGTGATATACCAGAAGAAGTAAAGACCATGGCTGTCTATGGCGATCAAGTGAGGATTCAACAGGTCTTAGCCGATTTCTTGTTGAATATGGTCCGTTACGCACCCTCTCCGGAAGGCTGGGTAGAAATACGTGTCTGTCCATTACTGAAGCAAAACTCAGATGGAATTACTCTTGCACACACTGAATTCAGGATTGTATGCCCTGGGGAAGGTCTACCTCCTGAGTTAGTTCAGGACATGTTTCATAGTGGCAGATGGGTGACTCAAGAAGGATTAGGCTTGAGCATGTGCAGAAAGATTCTGAAGCTCATGAATGGTGAAGTACAATACATCAGGGAATCTGAAAGATGCTATTTCTTGATTACTCTCGAACTCCCCTTGACAGAGAGAGGCCTAAACGATGTCGGTTAG 3399 43.66 MVSSNRATHSHQQQAQSSNTNTSNLRSHRTDSISKAIAQYTVDARLHAVFEQSGESGKSFDYSQSIKTSTQSVPEQQITAYLSKIQRGGHIQPFGCMIAIEEASFRVIAYSENARELLGLTPQSVPSLEKPEILTIGTDVRNLFTSNSAILLEKAFGAREITLLNPVWIHSKNSGKPFYAILHRIDVGIVIDLEPARTEDPALSIAGAVQSQKLAVRAISQLQALPGGDIKLLCDTVVESVRELTGYDRVMVYKFHEDEHGEVVAESKRPDLEPYIGLHYPSTDIPQASRFLFKQNRVRMIVDCHASPVRVIQDAGLMQHLCLVGSTLRAPHGCHAQYMANMGSIASLAMAVVINGNDDEAIGGRNSTRLWGLVVCHHTSARCIPFPLRYACEFLMQAFGLQLNMELQLASQLSEKHVLRTQTLLCDMLLRDSPAGIVTQSPSIMDLVKCDGAALYYQGKYYPLGVTPTEAQIKDIVEWLLAFHGDSTGLSTDSLADAGYPGAALLGDAVCGMAVAYITKKDFLFWFRSHTAKEIKWGGAKHHPEDKDDGQRMHPRSSFKAFLEVVKSRSLPWENAEMDAIHSLQLILRDSFKNDVAINSKAVVHPHLGDLDLQGIDELSSVAREMVRLIETATAPIFAVDADGRINGWNAKIAELTGLAVEEAMGKSLVRDLVYKESEETVDRLVSRALKGEEDKNIEIKMRTFGPEEDQRTPFFVVVNACSSRDYTDNIVGVCFVGQDVTCQKVFMDKFVSIQGDYKAIIHSPNPLIPPIFASDDNTCCSEWNTAMEKLTGWSREDIIGKMLVGEVFGSCCRLKGPDALTKFMIVLHSAIGGQDNEKYPFSFYDKKGKYVQALLTANKRMNMEGQIVGAFCFLQIASPELQQTLRMQRQQEKNRFARMKELAYICQEVKSPLSGIRFTNSLLEATDLSEDQKQFLETSVACEKQMLKIIEDMDLECIDDGTMELEKGEFLLGSVINAVVSQVMILLRERSLQLIRDIPEEVKTMAVYGDQVRIQQVLADFLLNMVRYAPSPEGWVEIRVCPLLKQNSDGITLAHTEFRIVCPGEGLPPELVQDMFHSGRWVTQEGLGLSMCRKILKLMNGEVQYIRESERCYFLITLELPLTERGLNDVG* 1133
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 11284430 11290401 + CsaV3_3G015190.1 Csa03g01519 522424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g01519 1132 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 973 1122 IPR036890 -
Csa03g01519 1132 PIRSF Phytochrome_conventional 12 1130 IPR012129 GO:0006355|GO:0009585|GO:0009881|GO:0017006|GO:0042803
Csa03g01519 1132 SMART HisKA_10 898 962 IPR003661 GO:0000155|GO:0007165
Csa03g01519 1132 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 229 397 IPR016132 -
Csa03g01519 1132 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1010 1122 IPR003594 -
Csa03g01519 1132 PANTHER PHYTOCHROME 7 1126 - -
Csa03g01519 1132 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 886 954 IPR036097 GO:0000155|GO:0007165
Csa03g01519 1132 Gene3D PAS domain 620 745 - -
Csa03g01519 1132 TIGRFAM sensory_box: PAS domain S-box protein 629 743 IPR000014 -
Csa03g01519 1132 CDD PAS 768 876 IPR000014 -
Csa03g01519 1132 Gene3D PAS domain 770 878 - -
Csa03g01519 1132 ProSiteProfiles PAS repeat profile. 757 809 IPR000014 -
Csa03g01519 1132 Pfam GAF domain 229 407 IPR003018 GO:0005515
Csa03g01519 1132 Gene3D - 879 960 - -
Csa03g01519 1132 SMART HKATPase_4 1010 1125 IPR003594 -
Csa03g01519 1132 ProSiteProfiles Histidine kinase domain profile. 905 1125 IPR005467 -
Csa03g01519 1132 ProSiteProfiles PAS repeat profile. 622 693 IPR000014 -
Csa03g01519 1132 Pfam His Kinase A (phospho-acceptor) domain 902 962 IPR003661 GO:0000155|GO:0007165
Csa03g01519 1132 Gene3D - 412 585 IPR043150 -
Csa03g01519 1132 SUPERFAMILY PYP-like sensor domain (PAS domain) 85 199 IPR035965 -
Csa03g01519 1132 Gene3D - 961 1127 IPR036890 -
Csa03g01519 1132 SUPERFAMILY GAF domain-like 209 404 - -
Csa03g01519 1132 CDD HisKA 898 954 IPR003661 GO:0000155|GO:0007165
Csa03g01519 1132 SUPERFAMILY GAF domain-like 415 592 - -
Csa03g01519 1132 Pfam PAS fold 625 741 IPR013767 GO:0006355
Csa03g01519 1132 Pfam PAS fold 757 876 IPR013767 GO:0006355
Csa03g01519 1132 Gene3D PAS domain 84 332 - -
Csa03g01519 1132 PRINTS Phytochrome signature 144 166 IPR001294 GO:0006355|GO:0009584
Csa03g01519 1132 PRINTS Phytochrome signature 244 263 IPR001294 GO:0006355|GO:0009584
Csa03g01519 1132 PRINTS Phytochrome signature 329 350 IPR001294 GO:0006355|GO:0009584
Csa03g01519 1132 PRINTS Phytochrome signature 437 457 IPR001294 GO:0006355|GO:0009584
Csa03g01519 1132 PRINTS Phytochrome signature 522 541 IPR001294 GO:0006355|GO:0009584
Csa03g01519 1132 PRINTS Phytochrome signature 555 573 IPR001294 GO:0006355|GO:0009584
Csa03g01519 1132 PRINTS Phytochrome signature 625 641 IPR001294 GO:0006355|GO:0009584
Csa03g01519 1132 PRINTS Phytochrome signature 644 659 IPR001294 GO:0006355|GO:0009584
Csa03g01519 1132 PRINTS Phytochrome signature 719 736 IPR001294 GO:0006355|GO:0009584
Csa03g01519 1132 PRINTS Phytochrome signature 739 759 IPR001294 GO:0006355|GO:0009584
Csa03g01519 1132 CDD PAS 633 741 IPR000014 -
Csa03g01519 1132 SMART pas_2 756 826 IPR000014 -
Csa03g01519 1132 SMART pas_2 624 691 IPR000014 -
Csa03g01519 1132 Pfam Phytochrome region 420 594 IPR013515 GO:0006355|GO:0009584
Csa03g01519 1132 SUPERFAMILY PYP-like sensor domain (PAS domain) 771 875 IPR035965 -
Csa03g01519 1132 CDD HATPase_Phy-like 1009 1121 IPR044767 -
Csa03g01519 1132 SUPERFAMILY PYP-like sensor domain (PAS domain) 627 737 IPR035965 -
Csa03g01519 1132 SMART gaf_1 229 417 IPR003018 GO:0005515
Csa03g01519 1132 Pfam PAS fold 80 196 IPR013654 GO:0006355
Csa03g01519 1132 PANTHER TWO-COMPONENT HISTIDINE KINASE 7 1126 - -
Csa03g01519 1132 ProSitePatterns Phytochrome chromophore attachment site signature. 329 338 IPR013516 -
Csa03g01519 1132 Gene3D - 210 568 IPR029016 -
Csa03g01519 1132 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g02269 Csa-Chr1:19834955 Csa03g01519 Csa-Chr3:11284430 0 dispersed
Csa03g01519 Csa-Chr3:11284430 Csa07g00253 Csa-Chr7:1981713 0 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g01519 K12121 - csv:101212197 2250.32