Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g01529 ATGGAAAAGAAATTTGAAGAAGAATCAAGGATGGGGTTTGATGATTCCGCCGGGTTTTACTCTCCGGCGGTGTTTTCAGATGACTTTCCGTCTTCTAATTTTGATTCTTTTTCCAGTATTTTCGACATGCCATGTGATGCCCATAAAGCTTCTAATTTTGATTTTTATTATTACAATAACAATAATAGTAACAGTAATAATAATCCTTCTTCTTTCTTCGATTTGCTTTCTACGGCGGCTCCCCCACTTTCTTCACCGGCTTCCACCGTGCCGGAATCTTCCGAGGTTGTTAATGCTCCAACCACTCCTAATTCTTCCTCTGTTTCTTCTTCATCCAATGAAGCTGCCGCCATTGAAGAAGTCAACAACAGTACTACGACTCATGACAAGCCTTCTGCTTCTAAAGTGTTGAAGCCAATAAAGAAGAACCAGAAGAAGCAAAGAGAACCCAGATTTGCTTTCATGACAAAGAGTGATATTGATCATCTCGACGATGGTTACCGGTGGCGAAAGTACGGTCAAAAAGCTGTGAAGAATAGCCCTTACCCCAGAAGCTATTATCGTTGTACAACGGCAGGGTGTGGTGTGAAGAAGAGAGTAGAGCGGTCGTCCGGCGACCATACGATAGTCGTTACAACGTACGAAGGCCAACACACTCACCAAAGTCCAATAATGCCTCGAGGGAGTCTCAGAGTTTTACCAGAATCCACCAACAACAGCCTCACCGTCGATCACGACACCACCGCCACCGGACTTTTATTCCAACACAACACTTCCCAACCCTTCATGTATATCGCTCCACCCCCGCCATTTCTAACAATCAACTCATCGTCGGTGGCGGCCAGCCATAATCCTCCTCCTATTTCATTTCAGCCACCGTCGCCGCAAGCTTCCGTCCGAGACCATGGGCTTTTACAGGACTTAGTGCCATTGCAAATGAGAAAGGAACCAAAAGATGAGCAAAATGGATGA 972 45.27 MEKKFEEESRMGFDDSAGFYSPAVFSDDFPSSNFDSFSSIFDMPCDAHKASNFDFYYYNNNNSNSNNNPSSFFDLLSTAAPPLSSPASTVPESSEVVNAPTTPNSSSVSSSSNEAAAIEEVNNSTTTHDKPSASKVLKPIKKNQKKQREPRFAFMTKSDIDHLDDGYRWRKYGQKAVKNSPYPRSYYRCTTAGCGVKKRVERSSGDHTIVVTTYEGQHTHQSPIMPRGSLRVLPESTNNSLTVDHDTTATGLLFQHNTSQPFMYIAPPPPFLTINSSSVAASHNPPPISFQPPSPQASVRDHGLLQDLVPLQMRKEPKDEQNG* 324
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 11362956 11365199 + CsaV3_3G015290.1 Csa03g01529 522434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g01529 323 MobiDBLite consensus disorder prediction 83 149 - -
Csa03g01529 323 ProSiteProfiles WRKY domain profile. 158 223 IPR003657 GO:0003700|GO:0006355|GO:0043565
Csa03g01529 323 PANTHER WRKY TRANSCRIPTION FACTOR 48-RELATED 39 308 - -
Csa03g01529 323 Gene3D WRKY domain 148 224 IPR036576 GO:0003700|GO:0006355|GO:0043565
Csa03g01529 323 Pfam WRKY DNA -binding domain 164 221 IPR003657 GO:0003700|GO:0006355|GO:0043565
Csa03g01529 323 MobiDBLite consensus disorder prediction 276 323 - -
Csa03g01529 323 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 39 308 IPR044810 GO:0003700
Csa03g01529 323 MobiDBLite consensus disorder prediction 83 132 - -
Csa03g01529 323 SUPERFAMILY WRKY DNA-binding domain 155 223 IPR036576 GO:0003700|GO:0006355|GO:0043565
Csa03g01529 323 SMART WRKY_cls 163 222 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa03g01529 Csa06g01861 CCT
Csa03g01529 Csa06g01861 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g01560 Csa-Chr2:14764150 Csa03g01529 Csa-Chr3:11362956 2.50E-34 dispersed
Csa03g01529 Csa-Chr3:11362956 Csa06g01861 Csa-Chr6:16783402 4.58E-52 dispersed
Csa04g00303 Csa-Chr4:1881152 Csa03g01529 Csa-Chr3:11362956 3.81E-33 dispersed
Csa03g01529 Csa-Chr3:11362956 Csa07g01176 Csa-Chr7:11502732 1.24E-44 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31211 PF03106 WRKY 1.70E-25 CL0274 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g01529 - - csv:101218177 574.318