Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g01544 ATGGCTCTCGACGCCGAAGCTGCACCGGCGGCGGAGTTGGCGCTTTCTGATACCGACATCAACTGGAACAGGTTGGACAAGACAAAGTTTCATATAATTGGGGCAATACTCTTTACGGTTCAGTCAGCCTTGTTACATCCAACAGCGGTTGTAAAAACTAGAATGCAAGTTGATGGATCTGGTCTTTCTCACATGCGTGGAGTCTCAGTTTTCTGGAATATATTGAAGTCCGATGGAATCTCTGGCTTGTACAGAGGATTTGGTACTTCAGCAATTGGATCATTACCTGGTCGAGTATTGGCTTTAACATCACTAGAAGTATCAAAAGACATAATGTTGAAATATACTGAAAATCTGGAAATGCCTGAAGCAACGCGTATTGGTCTTGCTAATGGAGTTGCAGGCATGATCTCAAATTTAGTTTCATGCATATACTATGTGCCATTGGACGTGGTTTGCCAGAGGCTGATGGTTCAAGGGCTTCCTGGAACCACCTACTGCAATAGCCCACTTGATGTTGTCAGAAAAGTGATGAAGGCCGAAGGATTTCGTGGTTTATATAGGGGTTTTGGATTAACGGCTGTAACTCAGTCTCCAGCATCTGCCCTCTGGTGGGGTGTTTATGGTGCTGCTCAACATATTATCTGGAGGAGCTTAGGATATCGAGATAGCATGGAGAAGAAACCTTCTCACATGGAGATGGTTACAGTTCAGGCCACAGCAGGAATGGTGGCAGGTGCTTGTTCCTCTGTTATTACAACTCCCATTGACACAGTAAAAACCAGACTTCAGGTCATCGATAACTATGGAATTGGAAGACCATCCGTGCTCAAGACATCAAGAGCACTTCTCAAGGAAGATGGATGGCTGGGATTTTACAGAGGCTTTGGACCTCGGTTTTTGAATATGTCACTGTATGGAACCACGATGATAGTCACGTATGAACTGATCAAGCGACTTTCCCTAAAGGACATTGTGACATCTTGA 987 44.58 MALDAEAAPAAELALSDTDINWNRLDKTKFHIIGAILFTVQSALLHPTAVVKTRMQVDGSGLSHMRGVSVFWNILKSDGISGLYRGFGTSAIGSLPGRVLALTSLEVSKDIMLKYTENLEMPEATRIGLANGVAGMISNLVSCIYYVPLDVVCQRLMVQGLPGTTYCNSPLDVVRKVMKAEGFRGLYRGFGLTAVTQSPASALWWGVYGAAQHIIWRSLGYRDSMEKKPSHMEMVTVQATAGMVAGACSSVITTPIDTVKTRLQVIDNYGIGRPSVLKTSRALLKEDGWLGFYRGFGPRFLNMSLYGTTMIVTYELIKRLSLKDIVTS* 329
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 11534182 11537353 + CsaV3_3G015440.1 Csa03g01544 522449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g01544 328 Gene3D Mitochondrial carrier domain 21 130 IPR023395 -
Csa03g01544 328 ProSiteProfiles Solute carrier (Solcar) repeat profile. 126 214 IPR018108 -
Csa03g01544 328 PANTHER OS01G0329400 PROTEIN 1 323 - -
Csa03g01544 328 ProSiteProfiles Solute carrier (Solcar) repeat profile. 25 111 IPR018108 -
Csa03g01544 328 ProSiteProfiles Solute carrier (Solcar) repeat profile. 233 320 IPR018108 -
Csa03g01544 328 SUPERFAMILY Mitochondrial carrier 23 316 IPR023395 -
Csa03g01544 328 Pfam Mitochondrial carrier protein 32 115 IPR018108 -
Csa03g01544 328 Pfam Mitochondrial carrier protein 237 323 IPR018108 -
Csa03g01544 328 Pfam Mitochondrial carrier protein 130 216 IPR018108 -
Csa03g01544 328 Gene3D Mitochondrial carrier domain 131 326 IPR023395 -
Csa03g01544 328 PANTHER MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN J 1 323 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g01544 Csa-Chr3:11534182 Csa05g03044 Csa-Chr5:30566402 1.58E-92 dispersed
Csa05g02754 Csa-Chr5:28277559 Csa03g01544 Csa-Chr3:11534182 5.40E-08 dispersed
Csa03g01544 Csa-Chr3:11534182 Csa07g02371 Csa-Chr7:21864313 1.28E-74 transposed
Csa03g01544 Csa-Chr3:11534182 Csa04g02565 Csa-Chr4:25248807 8.43E-75 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g01544 K15121 - csv:101213375 640.958