Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g01559 ATGAGGGTAGGGAAGTATGAGTTGGGGAAAACTCTAGGAGAAGGGAATTTCGGGAAGGTGAAGTTGGCTGCGGATGTCCGTACCGGCTGTCGTTACGCCGTCAAGATCCTTGACAAGACCAAGATTCTCCATCTCAACTTCTCCGATCAGATTAAGCGTGAAATAAGTACTCTCAAGCTTCTTAGGCATCCGAATGTTGTTAGGCTTTATGAGGTTTTAGCTAGTAAGACGAAGATTTATATGGTTATGGAGTGCGCTTCTGGTGGAGAATTGTTTGATAGAATTGAATCGAAAGGTAAGATGGATGAAGCTGAAGGTCGGAGGATTTTCCAGCAGCTTATTGATGGTCTTAGCTACTGCCATGACAAAGGAGTTTACCACAGGGATCTCAAGTTGGAAAACGTGCTTGTTGATGCTAAGGGAAATATTAAGATTTCTGATTTTGGTCTCAGTGCTTTACCAAAGAATTGCCGGGAAGATGGTTTGCTGCACACAACCTGTGGAAGTCCTAACTATGTTGCACCGGAGGTTCTTGCTAATAGAGGATATAATGGAGCCGCCTCTGATATATGGTCATGTGGGGTTATCTTGTATGTTATTCTTACGGCTTTTCTACCTTTCGACGAGACCAATTTGGCTTTACTTTATAAAAAGACTTTGAGGGGGGATTTTCAGATACCCAAATGGTTATCAGCAGGTGCCAGAAATTTGATCAGGAGAACTCTCGACCCCAATCCCAATACTCGGATTACCATAGCAGGAATCAAAGAGAATGAGTGGTTCAAGACTGACTATAATCCTGCTTCTCCTTGTTATGATGACGATGAGGAGGAGGGTTCACTTACTGATCAGGATGATGCCATCTCAACGCTTGATGAGCCATCTGACGCTGAAAACAGCCCGGAATCTCCTTCTATTATCAATGCTTTTGAGTTAATTGGAATGTCTTCAAGTTTGGATTTATCCGGATTCTTTGAGCAAGAGGATGTCTCCGAGAGGAAGATCAGATTTACCTCAAATCGTTCTGCCAAAGACTTGCTTGAGAGAATCGAGGTTATCGCAACGGATATGGGATTTCGAGTTCAAAAGAGAAGTGGAAAGTTGAAATTGATTCAAGAGATAAGAAGTCAAAAAAGCCTAAGTAATCTATCATTTGTAGCAGAGGTCTTTGAGATACGCCCACTGCTTCATGTAGTTGAACTGAAAAAATCTTTTGGAGACTCATCAGCTTACAGACAGTTGTGTGAAAGACTGTCAAGTGATTTGGGCACAAACCCAGAGCTCGAACGGCAAAATTCAAGCTCGTTTGCATTAAACAGTACATGTTAG 1329 42.36 MRVGKYELGKTLGEGNFGKVKLAADVRTGCRYAVKILDKTKILHLNFSDQIKREISTLKLLRHPNVVRLYEVLASKTKIYMVMECASGGELFDRIESKGKMDEAEGRRIFQQLIDGLSYCHDKGVYHRDLKLENVLVDAKGNIKISDFGLSALPKNCREDGLLHTTCGSPNYVAPEVLANRGYNGAASDIWSCGVILYVILTAFLPFDETNLALLYKKTLRGDFQIPKWLSAGARNLIRRTLDPNPNTRITIAGIKENEWFKTDYNPASPCYDDDEEEGSLTDQDDAISTLDEPSDAENSPESPSIINAFELIGMSSSLDLSGFFEQEDVSERKIRFTSNRSAKDLLERIEVIATDMGFRVQKRSGKLKLIQEIRSQKSLSNLSFVAEVFEIRPLLHVVELKKSFGDSSAYRQLCERLSSDLGTNPELERQNSSSFALNSTC* 443
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 11613345 11616277 + CsaV3_3G015590.1 Csa03g01559 522464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g01559 442 SUPERFAMILY Protein kinase-like (PK-like) 3 271 IPR011009 -
Csa03g01559 442 Pfam Protein kinase domain 6 261 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa03g01559 442 Pfam NAF domain 304 363 IPR004041 GO:0007165
Csa03g01559 442 Gene3D Kinase associated domain 1, KA1 306 424 - -
Csa03g01559 442 ProSitePatterns Protein kinases ATP-binding region signature. 12 35 IPR017441 GO:0005524
Csa03g01559 442 MobiDBLite consensus disorder prediction 266 303 - -
Csa03g01559 442 ProSiteProfiles NAF domain profile. 302 326 IPR018451 GO:0007165
Csa03g01559 442 ProSiteProfiles Protein kinase domain profile. 6 261 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa03g01559 442 CDD CIPK_C 308 422 - -
Csa03g01559 442 ProSitePatterns Serine/Threonine protein kinases active-site signature. 125 137 IPR008271 GO:0004672|GO:0006468
Csa03g01559 442 SMART serkin_6 6 261 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa03g01559 442 Gene3D Transferase(Phosphotransferase) domain 1 2 305 - -
Csa03g01559 442 PANTHER - 1 428 - -
Csa03g01559 442 MobiDBLite consensus disorder prediction 284 303 - -
Csa03g01559 442 PANTHER CBL-INTERACTING PROTEIN KINASE 21 1 428 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g01559 Csa-Chr3:11613345 Csa06g00024 Csa-Chr6:162738 0 dispersed
Csa03g01559 Csa-Chr3:11613345 Csa01g02318 Csa-Chr1:20282952 5.84E-134 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77987 PF00069 Pkinase 1.30E-71 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g01559 K07198 - csv:101205987 879.011