Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g01584 ATGGAGGACGATTTCGAGTTCCCATCTGCAAGCAACGTGGATGAGGAAATGGGGTTGCCCGAGGACGAAGCCGAGAGCCCAGTTCTGAATGTTGGCCAAGAGAAGGAGATTGGGAAGAATGGGCTGAAGAAGAAACTTGTTAAAGAAGGTGAAGGATGGGAAACTCCCGACACTGGTGATGAGGTCGAAGTGCATTATACGGGAACCCTTCTTGATGGCACTCAGTTTGATTCGAGCCGTGACCGAGGAACGCCTTTCAAGTTCAAGCTCGGGGAAGGCCAAGTGATTAAAGGGTGGGATGAAGGTATCAGAACAATGAAAAAGGGTGAAAATGCAGTTTTCACGATACCCCCGGAATTGGCCTATGGAGAGTCCGGCTCTCCTCCAACAATACCACCGAACGCTACTCTTCAATTTGACGTTGAGCTACTTTCGTGGCACAGTGTCAAAGACATCTGTCAAGATGGAGGAATCTTGAAAAAGATCCTTGTTAAAGGAGATGGTTGGGAAAAACCGAAGGATCTAGACGAAGTTCTGGTTCGTTATGAGGCTCGTCTTGAAAACGGTACACTGATCTCAAAGTCTGATGGGGTCGAATTCACTGTTGAAAAGGGGTACTTCTGTCCTGCCTTGGCAACTGCTGTGAAGACGATGAAAAAAGGGGAGAAAGCTTTGTTGACTGTTAGACCACAATATGGATTTGGGGAGTCTGGTAGGCCTGTATCTGGAGAAGAAGGTGCTGTGCCTCCAAATGGTACACTTCAAATTACCCTTCAATTGGATTCATTGAAAACTGTTACAGAGATCACAAAGGATAAGAAGGTCTTGAAGAAGACCCAGAAGGAGGGAGAAGGATATGAACAACCAAATGAGGGAGCAGTGGTGCAAGTGAAACTTACCGGCAAACTGGGTGATGGGACGATTTTTACTAAGAAGGGTGATGATGAAAGAACGTTTGAGTTCAAAATTGACGAAGAACAAGTCATTGAAGGACTCGATTTGGCTGTGAGAAAGATGAAGAAGGGAGAAATTGCCTTGGTGACGATCCATCCACAATATGCTTTTGGATCTTCTGATTCATCACAAGATCTAGCTGTGGTTCCTGCAAACTCAACTGTATATTACGAAGTTGAGCTGGTTTCATTCGTCAAAGAAAAAGAATCTTGGGACCTGAACAAAGCAGAAGAGAAAATAGAAGCAGCAGGTAAAAAGAAGGAAGAAGGAAACGTTCTATTCAAAGCTGGAAAATATGAGAGAGCATCAAGAAGATATGAAAAGGCTGTCCGCTACATTGAATATGATACTTCTTTCAGTGACGAGGAGAAGCAACAGAGCAAGGCACTAAAGATTTCATGCAATCTCAACAATGCTGCTTGCAAACTGAAAGTCAAAGACTACAAACAAGCAGAGAAGCTTTGTACAAAGGTGTTGGAACTTGACAGTAGGAACGTGAAAGCTCTATATAGAAGGGCTCAAGCATATATTCAACTTGTTGATCTTGATCTTGCTGAGCGGGATATCAAGAAAGCCCTCGAGATTGACCCAGATAACAGGGATGTGAAGATTGAATACAGGCAATTGGAAGACAAGGTGAGGGAATACAATAAGAGAGATGCACAGTTTTACGGCAACATTTTTGCAAAAATGAACAAGTTGGAGCATGCTAAGTCGGCTAATTCAGGTGGAAAGCAAGAGGCAGTACCAATGACTATTGATAGCAAAGCTTAA 1728 43.69 MEDDFEFPSASNVDEEMGLPEDEAESPVLNVGQEKEIGKNGLKKKLVKEGEGWETPDTGDEVEVHYTGTLLDGTQFDSSRDRGTPFKFKLGEGQVIKGWDEGIRTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLSWHSVKDICQDGGILKKILVKGDGWEKPKDLDEVLVRYEARLENGTLISKSDGVEFTVEKGYFCPALATAVKTMKKGEKALLTVRPQYGFGESGRPVSGEEGAVPPNGTLQITLQLDSLKTVTEITKDKKVLKKTQKEGEGYEQPNEGAVVQVKLTGKLGDGTIFTKKGDDERTFEFKIDEEQVIEGLDLAVRKMKKGEIALVTIHPQYAFGSSDSSQDLAVVPANSTVYYEVELVSFVKEKESWDLNKAEEKIEAAGKKKEEGNVLFKAGKYERASRRYEKAVRYIEYDTSFSDEEKQQSKALKISCNLNNAACKLKVKDYKQAEKLCTKVLELDSRNVKALYRRAQAYIQLVDLDLAERDIKKALEIDPDNRDVKIEYRQLEDKVREYNKRDAQFYGNIFAKMNKLEHAKSANSGGKQEAVPMTIDSKA* 576
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 11754826 11758877 + CsaV3_3G015840.1 Csa03g01584 522489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g01584 575 MobiDBLite consensus disorder prediction 1 35 - -
Csa03g01584 575 SUPERFAMILY FKBP-like 37 152 - -
Csa03g01584 575 Gene3D Tetratricopeptide repeat domain 386 544 IPR011990 GO:0005515
Csa03g01584 575 PANTHER PEPTIDYLPROLYL ISOMERASE 276 383 - -
Csa03g01584 575 PANTHER PEPTIDYLPROLYL ISOMERASE 383 561 - -
Csa03g01584 575 PANTHER PEPTIDYLPROLYL ISOMERASE 19 271 - -
Csa03g01584 575 Gene3D - 151 262 IPR046357 GO:0003755
Csa03g01584 575 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 276 383 - -
Csa03g01584 575 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 383 561 - -
Csa03g01584 575 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 19 271 - -
Csa03g01584 575 SUPERFAMILY FKBP-like 268 398 - -
Csa03g01584 575 Coils Coil 517 537 - -
Csa03g01584 575 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 292 383 IPR001179 GO:0003755
Csa03g01584 575 SUPERFAMILY TPR-like 397 549 IPR011990 GO:0005515
Csa03g01584 575 ProSiteProfiles TPR repeat profile. 484 517 IPR019734 GO:0005515
Csa03g01584 575 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 59 147 IPR001179 GO:0003755
Csa03g01584 575 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 175 264 IPR001179 GO:0003755
Csa03g01584 575 SUPERFAMILY FKBP-like 150 268 - -
Csa03g01584 575 SMART tpr_5 484 517 IPR019734 GO:0005515
Csa03g01584 575 SMART tpr_5 450 483 IPR019734 GO:0005515
Csa03g01584 575 SMART tpr_5 401 434 IPR019734 GO:0005515
Csa03g01584 575 Gene3D - 32 150 IPR046357 GO:0003755
Csa03g01584 575 Gene3D - 265 385 IPR046357 GO:0003755
Csa03g01584 575 Coils Coil 384 404 - -
Csa03g01584 575 MobiDBLite consensus disorder prediction 1 22 - -
Csa03g01584 575 Pfam Tetratricopeptide repeat 484 517 IPR001440 GO:0005515
Csa03g01584 575 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 54 144 IPR001179 GO:0003755
Csa03g01584 575 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 170 259 IPR001179 GO:0003755
Csa03g01584 575 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 286 380 IPR001179 GO:0003755
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g01584 Csa-Chr3:11754826 Csa07g01568 Csa-Chr7:16107814 0 dispersed
Csa04g01316 Csa-Chr4:13511642 Csa03g01584 Csa-Chr3:11754826 8.55E-15 dispersed
Csa03g01584 Csa-Chr3:11754826 Csa03g01633 Csa-Chr3:12205497 3.96E-06 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g01584 K09571 - csv:101210041 1108.2