Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g01585 ATGGAGAAGGACAAACCCCAAAGCTTTTCTGGTGGATTTCCGCCACCATCAAGTCGTTACTCAGGTCTTTCACCAACTGGAAGCATTTTCAATGGAAAATCTGAGGCAACTTCATCTTCAATGTTGCTTCCTCCAATGCCTTCCGGTGGTCTTTCAGATTCAGGTCAATTTGGTCATGGAATGCCCACTGATTCTAATCGGTTCAGCCATGATATTAGTAGAATGCCTGATAACCCACCAAGAAATATTGGTCACAGACGTGCCCATTCAGAAATACTGACCCTTCCTGATGATATTTGTTTTGACAATGACCTCGGTGTGATTGGTAGTGCTGATGGCCCTTCTTTTTCTGATGATACTGAGGAAGATCTGTTGTCCATGTACCTTGACATGGACAAATTCAATTCCTCGACTGCCACCTCCACGATACAAGTTGGCGAGTCATCTTCAGCTGTTGGAGAAGCAAGATCAACTCCTACTTCAACAATTGGAGCAGCTACCTCTAAAGATGACGCTGCCGTTGGTTTGAAGGAGAGGCCGAGAGTTAGACACCAGCATAGCCAGTCTATGGATGGCTTGACAACCATAAAGCCTGAGATGCTCGTCTCTGGGTCTGATGAAGCCTCTGCAGCTGATTGCAAGAAAGCCATGTCAGCTACAAAACTCGCTGAGCTTGCGTTAATTGACCCCAAACGTGCTAAGAGGATATGGGCAAATCGACAGTCAGCTGCTAGGTCAAAGGAAAGAAAGATGCGGTACATCGCTGAGCTTGAACGGAAAGTTCAGACTCTGCAAACAGAGGCAACTTCTTTATCTGCTCAGTTAACCCTCTTACAGAGAGATACAAACGGTCTTTCTGCTGAGAACAATGAACTAAAGCTGCGGTTACAGACAATGGAGCAGCAGGTTCACCTGCAAGATGCTCTAAATGAAGCACTCAAAGAGGAAATTCAGCATTTGAAAGTACTGACTGGCCAAGCAATCCCAAATGGTGGATCAGTTACAAACTTTGCTTCCTTTGGAGCTGCCCAACCCTTTTACCCAAGCAATCAAGCAATGCACACTTTGTTAACTGCACAGCAGTTTCAACAACTTCAAATCCACTCACAGCAGCAACAACAACATTTCCAATACCATCAGCTTCATCAGCTTCATCAACAGTCAACTGGAGACAACAAATCCAAAGGATCGGCATCTTCTCCAAATCCAAAAGACAACAACACATCAGATACGTCCTCTACCACTTGTTGA 1251 45.0 MEKDKPQSFSGGFPPPSSRYSGLSPTGSIFNGKSEATSSSMLLPPMPSGGLSDSGQFGHGMPTDSNRFSHDISRMPDNPPRNIGHRRAHSEILTLPDDICFDNDLGVIGSADGPSFSDDTEEDLLSMYLDMDKFNSSTATSTIQVGESSSAVGEARSTPTSTIGAATSKDDAAVGLKERPRVRHQHSQSMDGLTTIKPEMLVSGSDEASAADCKKAMSATKLAELALIDPKRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATSLSAQLTLLQRDTNGLSAENNELKLRLQTMEQQVHLQDALNEALKEEIQHLKVLTGQAIPNGGSVTNFASFGAAQPFYPSNQAMHTLLTAQQFQQLQIHSQQQQQHFQYHQLHQLHQQSTGDNKSKGSASSPNPKDNNTSDTSSTTC* 417
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 11760363 11766191 + CsaV3_3G015850.1 Csa03g01585 522490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g01585 416 MobiDBLite consensus disorder prediction 11 45 - -
Csa03g01585 416 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 229 292 IPR004827 GO:0003700|GO:0006355
Csa03g01585 416 MobiDBLite consensus disorder prediction 1 84 - -
Csa03g01585 416 Gene3D - 230 283 - -
Csa03g01585 416 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 8 410 - -
Csa03g01585 416 Coils Coil 247 316 - -
Csa03g01585 416 SUPERFAMILY Leucine zipper domain 231 282 IPR046347 GO:0003700|GO:0006355
Csa03g01585 416 SMART brlzneu 227 291 IPR004827 GO:0003700|GO:0006355
Csa03g01585 416 Pfam bZIP transcription factor 231 285 IPR004827 GO:0003700|GO:0006355
Csa03g01585 416 MobiDBLite consensus disorder prediction 383 416 - -
Csa03g01585 416 CDD bZIP_plant_RF2 232 281 IPR044759 GO:0003700|GO:0006355
Csa03g01585 416 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 8 410 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g01585 Csa-Chr3:11760363 Csa03g01596 Csa-Chr3:11855707 0 dispersed
Csa03g01585 Csa-Chr3:11760363 Csa06g00532 Csa-Chr6:4513114 1.66E-53 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31215 PF00170 bZIP_1 1.90E-08 CL0018 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g01585 - - csv:101210291 743.036