Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g01590 ATGGAGAAGGAATTCTTCATGAATGATGGTGGATGCAGTTTTTATGGGATGGAAATCCAACCTAATGAGCTGAATTCAAGTGGGGGGTTGTTGAATCCCAATTGGGAAAATTCGATGGATCATAGCGATCTCTTTGAGTCTACTTTAAGTTCGATTGTGTCTTCTCCGGCGAATTCTCACATTATCGGTGGTGGCGGTGGCGGTGGCGGTGGAGATAACTTGATGATGCGAGAATTGATTGGAAGGCTGGGGAGTATTTGCAATTCTGGTGAGATTTCGCCTCATTCTTACATTGGTGGAACGAATAACAATAGTACGAACACTTCTTGTTACAATACGCCTTTGAATTCTCCTCCCAAGCTTAATTTATCCTCGATCATGGAGTCTCAGATCAGAGGGAATTTGATTCCCCATCACCAAAATCTTGCCCCATTTTCGACTGATCCTGGTTTCGCTGAGAGGGCTGCGAGATTTTCTTGTTTTGGGAACAGGAATCTTGGGGGATTGAATGGGCAATTGGGGTCTAATGAAACTCAAGAATTGAGTAACAGATCAATGGCTGGAGCTGGAGTGGAATCTGGAAAGTTATCCAGAGTTTCAAGTAACAAATCCTTCAACATTGGTGGAGTCGGATCCCCTCAAATGGTGGTTCAAGAAGGCGATCAAAGCCCAGTTCAAAAAGGGAATTCAATGCCAATCCCTAACAAGAAAGTATCGAACAGGTTTTCGAGGTCTTCGACTCCCGAAAATGCTGGTGATTCACGGGAAGGATCTTCGGTTTCCGAGCAGAATCCAATTGGGGAATCGGGTTTAAAAGGTAAAGCTGAAACCAACACTAGGAAAAGGAAATCAGTTCAAACTGGTCAAGCAAAAGATGTGAAGGCTGCAGTAGAGAACCATGAACCAAATGGAAAGAAAATCAAACCAGATGAAGTTACTAAGAAAGAGATTGATGGTGCAAAAGGAAAGGCAGAGGCAAAATCTTCAGGAGATGCAAATCAGAAACAAAACAATGATAGTTCAAAGCCTCCTGAGCCTCCAAAGGATTATATCCATGTTAGAGCTAGAAGAGGTCAAGCTACAGATAGCCACAGTTTGGCTGAAAGAGTCCGACGCGAGAAAATCAGCAAACGAATGAAGTTCCTTCAGGATCTTGTTCCCGGTTGCAATAAGGTAACTGGAAAGGCAGTCATGCTTGATGAAATTATAAACTATGTTCAGTCTTTGCAGCGTCAAGTTGAGTTTCTTTCAATGAAATTGGCAACTGTTAATCCAAGGATGGATTTTAACATGGAAACTCTTGTGCCAAAGGATATCTTCAAAGGTCCCGGTTCCTCTTCGCATACGGTTTACCCTATGGATTCATCTGTACCCCAATTTGCATATGATTATCAATCTATGCACGTGACTCCTCTTCACAGTGGCATTCCTAATGGGACAGAGAAGCAATTCTCAGTTGCCTCAGCAAATGATGTGATGCAAAGAAATCTAAGCGGGCAAATGACAAACGGGTACAACGAAGTCGTGAATGGAATCCAAATTTCAAAGTTCTGGGAAGATGAACTCCACACAGTAGTTCAAATGGGTTATGGACAAAACCAACTGCAGAATGCTAATGATGAAATGAAAAGTGAATTGTAA 1641 42.41 MEKEFFMNDGGCSFYGMEIQPNELNSSGGLLNPNWENSMDHSDLFESTLSSIVSSPANSHIIGGGGGGGGGDNLMMRELIGRLGSICNSGEISPHSYIGGTNNNSTNTSCYNTPLNSPPKLNLSSIMESQIRGNLIPHHQNLAPFSTDPGFAERAARFSCFGNRNLGGLNGQLGSNETQELSNRSMAGAGVESGKLSRVSSNKSFNIGGVGSPQMVVQEGDQSPVQKGNSMPIPNKKVSNRFSRSSTPENAGDSREGSSVSEQNPIGESGLKGKAETNTRKRKSVQTGQAKDVKAAVENHEPNGKKIKPDEVTKKEIDGAKGKAEAKSSGDANQKQNNDSSKPPEPPKDYIHVRARRGQATDSHSLAERVRREKISKRMKFLQDLVPGCNKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPRMDFNMETLVPKDIFKGPGSSSHTVYPMDSSVPQFAYDYQSMHVTPLHSGIPNGTEKQFSVASANDVMQRNLSGQMTNGYNEVVNGIQISKFWEDELHTVVQMGYGQNQLQNANDEMKSEL* 547
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 11810548 11813843 + CsaV3_3G015900.1 Csa03g01590 522495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g01590 546 MobiDBLite consensus disorder prediction 274 325 - -
Csa03g01590 546 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 36 536 IPR024097 GO:0006355
Csa03g01590 546 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 357 429 IPR036638 GO:0046983
Csa03g01590 546 MobiDBLite consensus disorder prediction 174 350 - -
Csa03g01590 546 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 359 409 IPR011598 GO:0046983
Csa03g01590 546 SMART finulus 365 415 IPR011598 GO:0046983
Csa03g01590 546 CDD bHLH_AtBPE_like 349 434 - -
Csa03g01590 546 MobiDBLite consensus disorder prediction 195 266 - -
Csa03g01590 546 MobiDBLite consensus disorder prediction 329 343 - -
Csa03g01590 546 Gene3D - 356 430 IPR036638 GO:0046983
Csa03g01590 546 Pfam Helix-loop-helix DNA-binding domain 363 410 IPR011598 GO:0046983
Csa03g01590 546 PANTHER TRANSCRIPTION FACTOR BHLH78-LIKE ISOFORM X1 36 536 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g01590 Csa-Chr3:11810548 Csa07g01563 Csa-Chr7:16047841 3.09E-84 dispersed
Csa07g01674 Csa-Chr7:17195587 Csa03g01590 Csa-Chr3:11810548 4.16E-22 dispersed
Csa03g01590 Csa-Chr3:11810548 Csa07g00008 Csa-Chr7:185656 2.64E-50 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31216 PF00010 HLH 1.20E-05 No_clan Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g01590 - - csv:101211278 1063.14