Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g01596 ATGGACAAGGAAAAGCCCCAAAGCCATGGGGGAGGAGGGGGAGGATTTCTGCACCAATCAAGTCGTTACTCGGGTTTTTCATCTGCTGAAAGTAGTTTCAATGGAAAATCTGAGGCAACTTCGTCTTCCATGTCATTCCCTCCATTGGCTCCGAGTACTAATTCTGATTGGGGTCAATCTGGCCGTGGATTGTCCAACGATTCCACTCGGTTCAGCAATGATATTAGTCGGATGCCTGAAAATCCACGGAGAAATGTTGGTCATAGGCGTGCCCACTCAGAGATCCTGACCCTCCCAGATGATATTTGTTTCGATAGTGACCTTGGTATCATTGGCGGGGCTGATGGGCCTTCTCTTTCTGATGATACTGAGGAAGATTTGTTGTCCATGTACCTTGACATGGATAAATTCAATTCCTCGACTGCTACTTCTGCAAATCAAGTGGGTGACTCATCGTCTCCCCTTGTAGAAGCAGCAGCAACTTCTACAGATGATATTGCTGTTGGATTGAAGGAGAGACCCAGAGTTAGACATCAGCATAGCCAGTCCATGGATGGCTTGACAAACATTAAGCCTGAGATGCTTGTCTCTGGGTCTGACGAAGCCTCTGCAGCTGATGCCAAGAAAGCCATGTCAGCTGCAAAGCTTGCTGAGCTTGCGTTGATTGACCCCAAACGTGCCAAAAGGATATGGGCAAACAGACAATCGGCTGCACGGTCAAAGGAAAGAAAGATGCGGTACATTGCTGAGCTTGAACGGAAAGTTCAAACTTTGCAAACAGAGGCAACTTCTTTGTCTACTCAGTTGACCCTCTTACAGAGAGATGCAAATGGTATCACTGCCGAGAACAGTGAACTAAAGCTGCGATTGCAGACAATGGAACAGCAGGTTCACCTGCAAGACGCTTTAAATGAAGCACTGAAAGAAGAAATTCAGCATCTGAAAGTCTTGACTGGTCAAGCAATGCCAAACGGTAGATCAATTACAAACTTTGCTTCCTTTGGAGCCGGCCAACAGTTCTATGCTCCAAACAATCAAGCAGTGCATACTTTGTTAACTGCCCAACAGTTTCAGCAACTTCAAATACAATCCCAACAGCAACAGCAACAGCATTTTCAATACCAACAACTGCATCAGCTTCAGCAACAACAGGCAGGAGACATAAGAATGAAAGGGTCCGTATCTCCTCAAAGCTCAAAAGACTCTGCATCTGACACGAAGCCGCCTACCACTTGCTGA 1239 46.33 MDKEKPQSHGGGGGGFLHQSSRYSGFSSAESSFNGKSEATSSSMSFPPLAPSTNSDWGQSGRGLSNDSTRFSNDISRMPENPRRNVGHRRAHSEILTLPDDICFDSDLGIIGGADGPSLSDDTEEDLLSMYLDMDKFNSSTATSANQVGDSSSPLVEAAATSTDDIAVGLKERPRVRHQHSQSMDGLTNIKPEMLVSGSDEASAADAKKAMSAAKLAELALIDPKRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATSLSTQLTLLQRDANGITAENSELKLRLQTMEQQVHLQDALNEALKEEIQHLKVLTGQAMPNGRSITNFASFGAGQQFYAPNNQAVHTLLTAQQFQQLQIQSQQQQQQHFQYQQLHQLQQQQAGDIRMKGSVSPQSSKDSASDTKPPTTC* 413
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 11855707 11861286 - CsaV3_3G015960.1 Csa03g01596 522501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g01596 412 MobiDBLite consensus disorder prediction 1 89 - -
Csa03g01596 412 Gene3D - 224 276 - -
Csa03g01596 412 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 223 286 IPR004827 GO:0003700|GO:0006355
Csa03g01596 412 MobiDBLite consensus disorder prediction 20 79 - -
Csa03g01596 412 Pfam bZIP transcription factor 225 273 IPR004827 GO:0003700|GO:0006355
Csa03g01596 412 SMART brlzneu 221 285 IPR004827 GO:0003700|GO:0006355
Csa03g01596 412 SUPERFAMILY Leucine zipper domain 225 275 IPR046347 GO:0003700|GO:0006355
Csa03g01596 412 Coils Coil 241 310 - -
Csa03g01596 412 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 9 407 - -
Csa03g01596 412 MobiDBLite consensus disorder prediction 385 412 - -
Csa03g01596 412 CDD bZIP_plant_RF2 226 275 IPR044759 GO:0003700|GO:0006355
Csa03g01596 412 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 9 407 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g01585 Csa-Chr3:11760363 Csa03g01596 Csa-Chr3:11855707 0 dispersed
Csa03g01596 Csa-Chr3:11855707 Csa05g00893 Csa-Chr5:6934222 2.16E-67 dispersed
Csa03g01596 Csa-Chr3:11855707 Csa06g00532 Csa-Chr6:4513114 2.27E-51 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31217 PF00170 bZIP_1 1.00E-08 CL0018 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g01596 - - csv:101212010 710.294