Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g01619 ATGGATACAATACAAGTTTTGGACTTTGATTATTCAAACTGCTGTTATTTTCAAATAGCCAACCTGTCTCCTCTTCTTCCCCTCTACTATATAATCAAACATAAGAGATCTATCTTAGCTTCATCAAACATAGAAATGGCTGGTCTTTCAATGGGGACAAGTTTTGGAGTCTTCATTTTCCTTCACTTCTTTCTACTGTCTTCTTCTTCAGCCTTTTCCAAGCCTGCCTCTAATGGCATTGATTGGTGGTGCAAAAAAACCACGTACCCTGAAACCTGCAAGTACTTTTTCAACCATGGCACCAAGTCTCCTCCCAAAGATATGACTGACTTCAAGAAAATGGTGATCCAATTCGCCATGGAAAGAGCTCTGAGTGCTGAGAGCCACACTAAAGGTGTCGGTTCCAAGTGTCGAAATGGGAAGGAAAAGGCTGCTTGGGCTGATTGCTTGAAGCTTTACCAAAATACCATCCTTCAGCTTAACCAAACCCTTGATTCCTCTACTAAAAGTACTGAGTTTGATATCCAAACCTGGCTCAGTACTGCCCTAACCAACCTTGAGACCTGTCGCACCGGGTTTGCTGAGCTTAATGTTTCGGACTATATATTGCCACTGATCATGTCAGACAATGTCACTGAGTTAATAAGCAACAGTTTGGCTATTAATAATGCTTCAGCTGGGGTGGGGAATGGGAAGGAGACGTACAAAAAAGGATTTCCAAGTTGGCTTTCGGGTGGTGATAGGAGGTTACTGCAGTCATCTTCAACAAAGGTGGACCTTGTGGTGGCTCAGGATGGATCCGGTAACTATACGACGGTAGGAGCTGCTCTTGAGGAAGCTGCAAAAAGGAAGACAAGTGGAAGATTTGTTATACAAGTAAAGAGAGGGGTTTACAGAGAAAATCTCGAGATAGGAAGTAAGATGAAGAATATAATGCTCATTGGAGATGGAATGAGATTTACCTTCATTACCGGCAATAGAAGTGTAGGAGGAGGCTCCACCACTTTCAATTCTGCTACTGTTGCGGTGACTGGTGAAGGATTTATAGCTCGCGGCATCACATTCCGGAATACCGCTGGTCCTGAGAACCATCAAGCAGTTGCACTCCGATCTGGCGCAGATCTTTCTGTTTTCTACCGTTGTGCCTTTGAAGGGTATCAAGACACCCTTTATGTCCATTCACAAAGACAATTCTATAAGGAGTGTTATATTTACGGCACTGTAGATTTTATATTTGGCAATGCTGCAGTTGTTCTACAGAATTGCATGATTTATGCAAGGAAGCCAATGAATGGTCAGAAGAACGCAGTCACTGCTCAAGGACGGACAGATCCAAATCAAAATACTGGCATTTCAATCCACAATTCACGAGTCATGGCCACAGATGACCTAAAACCAGTGGAGAGCACAGTGAAAACCTACTTAGGAAGGCCGTGGAAGGAGTACTCTCGAACAGTTTTCATGAAAACTTACATTGATAGTTTGGTTGATCCAGCAGGTTGGTTGGAGTGGGATGGTGACTTTGCGTTGAATACGTTATATTATGGAGAATATAACAACATTGGTCCTGGGTCACCAATTAGCCAGCGAGTGAAGTGGAAAGGTTACCATGTTATAACCAATTTAACAGAGGCATCAGAGTTCACCGTCCAAAATTTCATTGCAGGACAGTCGTGGTTGCCAGACACAGAGGTCCCATTCACTCCTGGACTCTAG 1716 43.3 MDTIQVLDFDYSNCCYFQIANLSPLLPLYYIIKHKRSILASSNIEMAGLSMGTSFGVFIFLHFFLLSSSSAFSKPASNGIDWWCKKTTYPETCKYFFNHGTKSPPKDMTDFKKMVIQFAMERALSAESHTKGVGSKCRNGKEKAAWADCLKLYQNTILQLNQTLDSSTKSTEFDIQTWLSTALTNLETCRTGFAELNVSDYILPLIMSDNVTELISNSLAINNASAGVGNGKETYKKGFPSWLSGGDRRLLQSSSTKVDLVVAQDGSGNYTTVGAALEEAAKRKTSGRFVIQVKRGVYRENLEIGSKMKNIMLIGDGMRFTFITGNRSVGGGSTTFNSATVAVTGEGFIARGITFRNTAGPENHQAVALRSGADLSVFYRCAFEGYQDTLYVHSQRQFYKECYIYGTVDFIFGNAAVVLQNCMIYARKPMNGQKNAVTAQGRTDPNQNTGISIHNSRVMATDDLKPVESTVKTYLGRPWKEYSRTVFMKTYIDSLVDPAGWLEWDGDFALNTLYYGEYNNIGPGSPISQRVKWKGYHVITNLTEASEFTVQNFIAGQSWLPDTEVPFTPGL* 572
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 12092582 12097998 - CsaV3_3G016190.1 Csa03g01619 522524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g01619 571 CDD PMEI-like_3 82 224 - -
Csa03g01619 571 SUPERFAMILY Pectin lyase-like 256 570 IPR011050 -
Csa03g01619 571 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 78 223 IPR035513 -
Csa03g01619 571 Pfam Plant invertase/pectin methylesterase inhibitor 80 221 IPR006501 GO:0004857
Csa03g01619 571 Gene3D - 253 571 IPR012334 -
Csa03g01619 571 Gene3D Invertase/pectin methylesterase inhibitor family protein 76 224 IPR035513 -
Csa03g01619 571 Pfam Pectinesterase 259 556 IPR000070 GO:0030599|GO:0042545
Csa03g01619 571 ProSitePatterns Pectinesterase signature 2. 404 413 IPR033131 -
Csa03g01619 571 PANTHER PECTINESTERASE 55 570 - -
Csa03g01619 571 PANTHER PECTINESTERASE 55 570 - -
Csa03g01619 571 SMART PMEI_2 75 221 IPR006501 GO:0004857
Csa03g01619 571 TIGRFAM PME_inhib: pectinesterase inhibitor domain 54 223 IPR006501 GO:0004857
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa03g01619 Csa05g00496 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g01602 Csa-Chr2:15140340 Csa03g01619 Csa-Chr3:12092582 3.09E-108 dispersed
Csa02g01603 Csa-Chr2:15144070 Csa03g01619 Csa-Chr3:12092582 1.17E-102 dispersed
Csa03g00565 Csa-Chr3:4852552 Csa03g01619 Csa-Chr3:12092582 0 dispersed
Csa03g01619 Csa-Chr3:12092582 Csa05g00496 Csa-Chr5:3205369 0 dispersed
Csa07g01870 Csa-Chr7:18722250 Csa03g01619 Csa-Chr3:12092582 2.55E-136 dispersed
Csa03g01619 Csa-Chr3:12092582 Csa05g02010 Csa-Chr5:23451164 4.47E-171 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g01619 K01051 - csv:101211449 1138.25