Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g01634 ATGGAGGAGAAAGAAACCGGAGTTTCTAGGTTTACAGTTACAAATGATGAAGCCCTAGACAACTTCGAGTTAGCTCCAAGAACAGAAGCCCTAAAATCAACCAGTGAGTCTAAAGTAACGGAGGTCGCGGTAGCTGCTCCACCACCGGGGTTTGTAGCGGCGACTGATACACCACCGGTGAGTGTAGCGGTATCTAGTACTGAAACAAAGAAGAAGAGAGGGAGACCGAGAAAGTACGGACCGGATGGGAAGCGGTCACTGACATTAGCGTTGTCGCCGATGCCGATATCGTCGTCAATTCCACTGACCGGAGAGTTCCCGAATTGGAAACGAGATAACGAGATTTCTCAAGCGATAGTGAAGAAGCCGCAGAGATTCGAGTTTGAGAATCCCGGTCAGAGACTTGCGTACTCTGTTGGTGCAAATTTTACTCCCCATGTGATCACTGTCAATGCTGGAGAGGACATTACAATGAAGGTTATGTCTTTCTCTCAACAAGAATCCCGAGCTATTTGCATTCTTTCTGCAAATGGGACAATTTCAAATGTTACCCTTCGGCAGGCAACTTCTTCTGGAGGTACCTTAACATATGAGGGTCGTTTTGAAATACTTGCATTGACCGGATCATATATGCCCACACAGAATGGAGCTACAAAGAGCAGATGTGGTGGGATGAGTGTCTCACTAGCGGGTCAAGATGGACGAGTCGTCGGCGGTGGACTTGCTGGTTTGTTGGTAGCTGCTGGTCCTGTGCAAATTGTGGTCGGCAGTTTCCTTCCAGGTCACCAGCAAGAACAAAAGCCAAAAAAACCTAGAAACGAATCCACAACGATTTTCTTCCCTCCCGTCAACACCATTACTGGTGAAGAAATGAAGGCAATGTATGCTGGTGGTAACAAGCCTATTCTCACAACGCCGTCCTATCAAGAACAACATAATCCACCGTCCCCTACCCCTGTGACGGGCTTCAAAATCTCCTCCACTGACAACTTACCTCTATCCGATCAAGAACCAAAAACACAAAGTCAATCAAACTGTGAGGTTTCTTGTTGA 1053 47.1 MEEKETGVSRFTVTNDEALDNFELAPRTEALKSTSESKVTEVAVAAPPPGFVAATDTPPVSVAVSSTETKKKRGRPRKYGPDGKRSLTLALSPMPISSSIPLTGEFPNWKRDNEISQAIVKKPQRFEFENPGQRLAYSVGANFTPHVITVNAGEDITMKVMSFSQQESRAICILSANGTISNVTLRQATSSGGTLTYEGRFEILALTGSYMPTQNGATKSRCGGMSVSLAGQDGRVVGGGLAGLLVAAGPVQIVVGSFLPGHQQEQKPKKPRNESTTIFFPPVNTITGEEMKAMYAGGNKPILTTPSYQEQHNPPSPTPVTGFKISSTDNLPLSDQEPKTQSQSNCEVSC* 351
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 12213375 12218111 - CsaV3_3G016340.1 Csa03g01634 522539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g01634 350 ProSiteProfiles PPC domain profile profile. 140 283 IPR005175 -
Csa03g01634 350 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 3 8 330 - -
Csa03g01634 350 SUPERFAMILY AF0104/ALDC/Ptd012-like 142 264 - -
Csa03g01634 350 MobiDBLite consensus disorder prediction 64 86 - -
Csa03g01634 350 Pfam Plants and Prokaryotes Conserved (PCC) domain 145 258 IPR005175 -
Csa03g01634 350 MobiDBLite consensus disorder prediction 302 350 - -
Csa03g01634 350 Gene3D - 145 274 - -
Csa03g01634 350 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 8 330 IPR039605 GO:0003680
Csa03g01634 350 CDD DUF296 144 258 IPR005175 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa03g01634 Csa05g00539 CCT
Csa03g01634 Csa05g00539 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g00966 Csa-Chr3:7872369 Csa03g01634 Csa-Chr3:12213375 3.84E-92 dispersed
Csa03g01634 Csa-Chr3:12213375 Csa05g01080 Csa-Chr5:10953266 6.56E-73 dispersed
Csa03g01634 Csa-Chr3:12213375 Csa05g00539 Csa-Chr5:3452950 3.85E-112 wgd
Csa03g01634 Csa-Chr3:12213375 Csa05g00365 Csa-Chr5:2347041 5.60E-84 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g01634 - - csv:101217222 655.595