Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa03g01634 | ATGGAGGAGAAAGAAACCGGAGTTTCTAGGTTTACAGTTACAAATGATGAAGCCCTAGACAACTTCGAGTTAGCTCCAAGAACAGAAGCCCTAAAATCAACCAGTGAGTCTAAAGTAACGGAGGTCGCGGTAGCTGCTCCACCACCGGGGTTTGTAGCGGCGACTGATACACCACCGGTGAGTGTAGCGGTATCTAGTACTGAAACAAAGAAGAAGAGAGGGAGACCGAGAAAGTACGGACCGGATGGGAAGCGGTCACTGACATTAGCGTTGTCGCCGATGCCGATATCGTCGTCAATTCCACTGACCGGAGAGTTCCCGAATTGGAAACGAGATAACGAGATTTCTCAAGCGATAGTGAAGAAGCCGCAGAGATTCGAGTTTGAGAATCCCGGTCAGAGACTTGCGTACTCTGTTGGTGCAAATTTTACTCCCCATGTGATCACTGTCAATGCTGGAGAGGACATTACAATGAAGGTTATGTCTTTCTCTCAACAAGAATCCCGAGCTATTTGCATTCTTTCTGCAAATGGGACAATTTCAAATGTTACCCTTCGGCAGGCAACTTCTTCTGGAGGTACCTTAACATATGAGGGTCGTTTTGAAATACTTGCATTGACCGGATCATATATGCCCACACAGAATGGAGCTACAAAGAGCAGATGTGGTGGGATGAGTGTCTCACTAGCGGGTCAAGATGGACGAGTCGTCGGCGGTGGACTTGCTGGTTTGTTGGTAGCTGCTGGTCCTGTGCAAATTGTGGTCGGCAGTTTCCTTCCAGGTCACCAGCAAGAACAAAAGCCAAAAAAACCTAGAAACGAATCCACAACGATTTTCTTCCCTCCCGTCAACACCATTACTGGTGAAGAAATGAAGGCAATGTATGCTGGTGGTAACAAGCCTATTCTCACAACGCCGTCCTATCAAGAACAACATAATCCACCGTCCCCTACCCCTGTGACGGGCTTCAAAATCTCCTCCACTGACAACTTACCTCTATCCGATCAAGAACCAAAAACACAAAGTCAATCAAACTGTGAGGTTTCTTGTTGA | 1053 | 47.1 | MEEKETGVSRFTVTNDEALDNFELAPRTEALKSTSESKVTEVAVAAPPPGFVAATDTPPVSVAVSSTETKKKRGRPRKYGPDGKRSLTLALSPMPISSSIPLTGEFPNWKRDNEISQAIVKKPQRFEFENPGQRLAYSVGANFTPHVITVNAGEDITMKVMSFSQQESRAICILSANGTISNVTLRQATSSGGTLTYEGRFEILALTGSYMPTQNGATKSRCGGMSVSLAGQDGRVVGGGLAGLLVAAGPVQIVVGSFLPGHQQEQKPKKPRNESTTIFFPPVNTITGEEMKAMYAGGNKPILTTPSYQEQHNPPSPTPVTGFKISSTDNLPLSDQEPKTQSQSNCEVSC* | 351 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 12213375 | 12218111 | - | CsaV3_3G016340.1 | Csa03g01634 | 522539 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa03g01634 | 350 | ProSiteProfiles | PPC domain profile profile. | 140 | 283 | IPR005175 | - | |
Csa03g01634 | 350 | PANTHER | AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 3 | 8 | 330 | - | - | |
Csa03g01634 | 350 | SUPERFAMILY | AF0104/ALDC/Ptd012-like | 142 | 264 | - | - | |
Csa03g01634 | 350 | MobiDBLite | consensus disorder prediction | 64 | 86 | - | - | |
Csa03g01634 | 350 | Pfam | Plants and Prokaryotes Conserved (PCC) domain | 145 | 258 | IPR005175 | - | |
Csa03g01634 | 350 | MobiDBLite | consensus disorder prediction | 302 | 350 | - | - | |
Csa03g01634 | 350 | Gene3D | - | 145 | 274 | - | - | |
Csa03g01634 | 350 | PANTHER | AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 | 8 | 330 | IPR039605 | GO:0003680 | |
Csa03g01634 | 350 | CDD | DUF296 | 144 | 258 | IPR005175 | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Csa03g01634 | Csa05g00539 | CCT | |
Csa03g01634 | Csa05g00539 | ECH |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa03g00966 | Csa-Chr3:7872369 | Csa03g01634 | Csa-Chr3:12213375 | 3.84E-92 | dispersed | |
Csa03g01634 | Csa-Chr3:12213375 | Csa05g01080 | Csa-Chr5:10953266 | 6.56E-73 | dispersed | |
Csa03g01634 | Csa-Chr3:12213375 | Csa05g00539 | Csa-Chr5:3452950 | 3.85E-112 | wgd | |
Csa03g01634 | Csa-Chr3:12213375 | Csa05g00365 | Csa-Chr5:2347041 | 5.60E-84 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa03g01634 | - | - | csv:101217222 | 655.595 |