Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa03g01653 | ATGACGGAAGTTCACTGTAGTATGCCTAGCGGAGATGATGAAGATACGCCGGCCAAATGCCGAGAGCGCCGGCGCCGTAGAATAGAGATGAGACGGTTAGCAACAGTATCGTCGGCGAATCCATCGCCTTCTACCGCTCATCACCAGAAAGAGAATCAAACTGGTACTTCCGGTTTTGAGAAGAAGCGTGGTCAGAAAACGGACGGCGACGGTAATCCGGAGATTTCATCGTCTTCGTCATCGGGGGAGGACGTGAAAACTGTGAGAGCTTCACCATCGGTACCCCAGCCGGTTTTTGGGATGATGTCGGTTTCAGGGAGGTCACGTGAGATGGAGGATGCAGTATGTGTGAGCACGTGCGTTCTTGGTTCAGAAAATTTCCGACGGCAAGTGGTGCATTTCTTCGCCGTCTACGATGGACATGGAGGCCCTCACGTGGCAGCATTATGTAGGGAGAAGATGCACGTGTTCGTACAGGAGGAATTTTCGCGCGTTATTAGCACTCGCGGGGAAAATGAGAGTGGCGGCGGCGGAAGTAGCGCGGGGGAGGAGGTTAAGTTTGAGGAGGAGGCGACTTGGAGAAGAGTGATGCGGCGGAGCTTTGAGAGAATGGACGAAGTGGCACTCAGTACTTGTGCCTGTGGGAGCGTCGGAGGTCAGTGTGGTTGCCATCCCATGGAGGTGGCTCTAGGCGGTTCTACCGCCGTCGTCGCTGTGCTCACGCCGGATCACATAATAGTCGCCAACTGCGGCGATTCACGCGCCGTCCTTTGCCGAGGAGGGACAGCCATTCCGCTTTCTATTGATCACAAGCCTGATAGAAATGATGAGCTAGCAAGGATTGAAGCTGCTGGAGGACGGGTGATTTTCGTAAATGGAGCCCGTGTTGAAGGAATCCTTGCCATGTCCCGTGCGATAGGGGACAAATATCTCAAGTCAGTTGTAATATCGGAACCTGAAGTTACTTTCACCAAAAGAGAATCAGAGGATGAATGTTTAATACTTGCTAGCGATGGTCTGTGGGATGTTCTTCCAAGTGAGTTGGCTTGTGAGGTAGCTCGTGAATGTCTCCAAGGAGTGGCAGCTACTACTACTACTACTACTACAATAGACCTCAATGCTGTGCCTCAAATTGAAGAAGAAGCGGCTGGAACTTCTTATCCTTCTCGAAGTGCATTGGCTGCTGCATTGTTAACTCGTCTTGCTTTAGGGCGGAAAAGTACAGACAACATCAGTGTCATAGTTATTGATCTAAAAAGGAGTTGA | 1266 | 51.11 | MTEVHCSMPSGDDEDTPAKCRERRRRRIEMRRLATVSSANPSPSTAHHQKENQTGTSGFEKKRGQKTDGDGNPEISSSSSSGEDVKTVRASPSVPQPVFGMMSVSGRSREMEDAVCVSTCVLGSENFRRQVVHFFAVYDGHGGPHVAALCREKMHVFVQEEFSRVISTRGENESGGGGSSAGEEVKFEEEATWRRVMRRSFERMDEVALSTCACGSVGGQCGCHPMEVALGGSTAVVAVLTPDHIIVANCGDSRAVLCRGGTAIPLSIDHKPDRNDELARIEAAGGRVIFVNGARVEGILAMSRAIGDKYLKSVVISEPEVTFTKRESEDECLILASDGLWDVLPSELACEVARECLQGVAATTTTTTTIDLNAVPQIEEEAAGTSYPSRSALAAALLTRLALGRKSTDNISVIVIDLKRS* | 422 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 12341428 | 12348867 | + | CsaV3_3G016530.1 | Csa03g01653 | 522558 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa03g01653 | 421 | MobiDBLite | consensus disorder prediction | 35 | 53 | - | - | |
Csa03g01653 | 421 | MobiDBLite | consensus disorder prediction | 54 | 69 | - | - | |
Csa03g01653 | 421 | MobiDBLite | consensus disorder prediction | 70 | 87 | - | - | |
Csa03g01653 | 421 | PANTHER | PROTEIN PHOSPHATASE 2C 75-RELATED | 44 | 420 | - | - | |
Csa03g01653 | 421 | Gene3D | - | 91 | 421 | IPR036457 | - | |
Csa03g01653 | 421 | SUPERFAMILY | PP2C-like | 91 | 419 | IPR036457 | - | |
Csa03g01653 | 421 | ProSiteProfiles | PPM-type phosphatase domain profile. | 98 | 418 | IPR001932 | - | |
Csa03g01653 | 421 | MobiDBLite | consensus disorder prediction | 8 | 23 | - | - | |
Csa03g01653 | 421 | ProSitePatterns | PPM-type phosphatase domain signature. | 134 | 142 | IPR000222 | GO:0043169 | |
Csa03g01653 | 421 | PANTHER | ALPHABET, ISOFORM E-RELATED | 44 | 420 | - | - | |
Csa03g01653 | 421 | MobiDBLite | consensus disorder prediction | 1 | 96 | - | - | |
Csa03g01653 | 421 | CDD | PP2Cc | 98 | 418 | IPR001932 | - | |
Csa03g01653 | 421 | SMART | PP2C_4 | 88 | 416 | IPR001932 | - | |
Csa03g01653 | 421 | Pfam | Protein phosphatase 2C | 99 | 359 | IPR001932 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa01g02461 | Csa-Chr1:21806317 | Csa03g01653 | Csa-Chr3:12341428 | 2.84E-33 | dispersed | |
Csa03g01653 | Csa-Chr3:12341428 | Csa06g02025 | Csa-Chr6:18188911 | 2.02E-76 | dispersed | |
Csa03g01653 | Csa-Chr3:12341428 | Csa06g00134 | Csa-Chr6:877776 | 7.09E-72 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa03g01653 | K14497 | - | csv:101206634 | 777.319 |