Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g01653 ATGACGGAAGTTCACTGTAGTATGCCTAGCGGAGATGATGAAGATACGCCGGCCAAATGCCGAGAGCGCCGGCGCCGTAGAATAGAGATGAGACGGTTAGCAACAGTATCGTCGGCGAATCCATCGCCTTCTACCGCTCATCACCAGAAAGAGAATCAAACTGGTACTTCCGGTTTTGAGAAGAAGCGTGGTCAGAAAACGGACGGCGACGGTAATCCGGAGATTTCATCGTCTTCGTCATCGGGGGAGGACGTGAAAACTGTGAGAGCTTCACCATCGGTACCCCAGCCGGTTTTTGGGATGATGTCGGTTTCAGGGAGGTCACGTGAGATGGAGGATGCAGTATGTGTGAGCACGTGCGTTCTTGGTTCAGAAAATTTCCGACGGCAAGTGGTGCATTTCTTCGCCGTCTACGATGGACATGGAGGCCCTCACGTGGCAGCATTATGTAGGGAGAAGATGCACGTGTTCGTACAGGAGGAATTTTCGCGCGTTATTAGCACTCGCGGGGAAAATGAGAGTGGCGGCGGCGGAAGTAGCGCGGGGGAGGAGGTTAAGTTTGAGGAGGAGGCGACTTGGAGAAGAGTGATGCGGCGGAGCTTTGAGAGAATGGACGAAGTGGCACTCAGTACTTGTGCCTGTGGGAGCGTCGGAGGTCAGTGTGGTTGCCATCCCATGGAGGTGGCTCTAGGCGGTTCTACCGCCGTCGTCGCTGTGCTCACGCCGGATCACATAATAGTCGCCAACTGCGGCGATTCACGCGCCGTCCTTTGCCGAGGAGGGACAGCCATTCCGCTTTCTATTGATCACAAGCCTGATAGAAATGATGAGCTAGCAAGGATTGAAGCTGCTGGAGGACGGGTGATTTTCGTAAATGGAGCCCGTGTTGAAGGAATCCTTGCCATGTCCCGTGCGATAGGGGACAAATATCTCAAGTCAGTTGTAATATCGGAACCTGAAGTTACTTTCACCAAAAGAGAATCAGAGGATGAATGTTTAATACTTGCTAGCGATGGTCTGTGGGATGTTCTTCCAAGTGAGTTGGCTTGTGAGGTAGCTCGTGAATGTCTCCAAGGAGTGGCAGCTACTACTACTACTACTACTACAATAGACCTCAATGCTGTGCCTCAAATTGAAGAAGAAGCGGCTGGAACTTCTTATCCTTCTCGAAGTGCATTGGCTGCTGCATTGTTAACTCGTCTTGCTTTAGGGCGGAAAAGTACAGACAACATCAGTGTCATAGTTATTGATCTAAAAAGGAGTTGA 1266 51.11 MTEVHCSMPSGDDEDTPAKCRERRRRRIEMRRLATVSSANPSPSTAHHQKENQTGTSGFEKKRGQKTDGDGNPEISSSSSSGEDVKTVRASPSVPQPVFGMMSVSGRSREMEDAVCVSTCVLGSENFRRQVVHFFAVYDGHGGPHVAALCREKMHVFVQEEFSRVISTRGENESGGGGSSAGEEVKFEEEATWRRVMRRSFERMDEVALSTCACGSVGGQCGCHPMEVALGGSTAVVAVLTPDHIIVANCGDSRAVLCRGGTAIPLSIDHKPDRNDELARIEAAGGRVIFVNGARVEGILAMSRAIGDKYLKSVVISEPEVTFTKRESEDECLILASDGLWDVLPSELACEVARECLQGVAATTTTTTTIDLNAVPQIEEEAAGTSYPSRSALAAALLTRLALGRKSTDNISVIVIDLKRS* 422
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 12341428 12348867 + CsaV3_3G016530.1 Csa03g01653 522558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g01653 421 MobiDBLite consensus disorder prediction 35 53 - -
Csa03g01653 421 MobiDBLite consensus disorder prediction 54 69 - -
Csa03g01653 421 MobiDBLite consensus disorder prediction 70 87 - -
Csa03g01653 421 PANTHER PROTEIN PHOSPHATASE 2C 75-RELATED 44 420 - -
Csa03g01653 421 Gene3D - 91 421 IPR036457 -
Csa03g01653 421 SUPERFAMILY PP2C-like 91 419 IPR036457 -
Csa03g01653 421 ProSiteProfiles PPM-type phosphatase domain profile. 98 418 IPR001932 -
Csa03g01653 421 MobiDBLite consensus disorder prediction 8 23 - -
Csa03g01653 421 ProSitePatterns PPM-type phosphatase domain signature. 134 142 IPR000222 GO:0043169
Csa03g01653 421 PANTHER ALPHABET, ISOFORM E-RELATED 44 420 - -
Csa03g01653 421 MobiDBLite consensus disorder prediction 1 96 - -
Csa03g01653 421 CDD PP2Cc 98 418 IPR001932 -
Csa03g01653 421 SMART PP2C_4 88 416 IPR001932 -
Csa03g01653 421 Pfam Protein phosphatase 2C 99 359 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g02461 Csa-Chr1:21806317 Csa03g01653 Csa-Chr3:12341428 2.84E-33 dispersed
Csa03g01653 Csa-Chr3:12341428 Csa06g02025 Csa-Chr6:18188911 2.02E-76 dispersed
Csa03g01653 Csa-Chr3:12341428 Csa06g00134 Csa-Chr6:877776 7.09E-72 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g01653 K14497 - csv:101206634 777.319