Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g01662 ATGGGAAGGGGAAAAGTAGTGCTTGAAAGAATAGAGAACAGAGTGAATCGTCAAGTGACCTTCTCAAAGAGAAGAAATGGGTTATTGAAGAAGGCTTCTGAACTCTCTGTGCTTTGTGATGTTGATGTTGCTCTCATCATCTTCTCTACTCGTGGAAAGCTCTTTGAATTTGGCAGCACTGACATGAACAAAATCCTTGAGAGGTATCACCAGCAATGTTACACCTCTGGATCAACCACCAATCTTGACGAGAGTGACGTACAGATAGAGGAGGTGTCAAAGCTGAGAGCTAAATATGAATCTCTTCAACGCTCCCATAGGAATTTTCTTGGAGAAGAACTTGAACCATTGACCTTAAAAGAGTTGCATAATCTTGAGAAACAGTTGGACAAAACTCTTTCACAAGCTAGACAGCGAAAGGCTGAAATAATGCTTCAAAAATTAGCAGACTTGCGCAAAATGGAGCAGGATCTTGGAGATCAAAATACTCAGCTCAAGTCAAAGCTCGAAAAAGATCAGGAACAGGAAGGTGGTGAGGAAGATCCAAAGAATTACGAAGTTGTGAGAGCTGACGACCCAAACATGATCAACACCACCAGGTATTATGAAGCCCAAGAAGAAGAAGAAGAGTGCAGGGGGGTGATAGACGGTGGGAGTAACTTAATCCCAGATTGGCTACTTTGA 684 42.4 MGRGKVVLERIENRVNRQVTFSKRRNGLLKKASELSVLCDVDVALIIFSTRGKLFEFGSTDMNKILERYHQQCYTSGSTTNLDESDVQIEEVSKLRAKYESLQRSHRNFLGEELEPLTLKELHNLEKQLDKTLSQARQRKAEIMLQKLADLRKMEQDLGDQNTQLKSKLEKDQEQEGGEEDPKNYEVVRADDPNMINTTRYYEAQEEEEECRGVIDGGSNLIPDWLL* 228
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 12441805 12446640 + CsaV3_3G016620.1 Csa03g01662 522567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g01662 227 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 176 - -
Csa03g01662 227 Pfam K-box region 89 169 IPR002487 GO:0003700|GO:0005634|GO:0006355
Csa03g01662 227 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Csa03g01662 227 Coils Coil 119 142 - -
Csa03g01662 227 MobiDBLite consensus disorder prediction 158 188 - -
Csa03g01662 227 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Csa03g01662 227 ProSiteProfiles K-box domain profile. 85 175 IPR002487 GO:0003700|GO:0005634|GO:0006355
Csa03g01662 227 Gene3D - 14 92 IPR036879 GO:0003677|GO:0046983
Csa03g01662 227 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Csa03g01662 227 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Csa03g01662 227 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Csa03g01662 227 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Csa03g01662 227 Coils Coil 151 175 - -
Csa03g01662 227 PANTHER TRUNCATED TRANSCRIPTION FACTOR CAULIFLOWER A-LIKE ISOFORM X1 1 176 - -
Csa03g01662 227 SUPERFAMILY SRF-like 2 86 IPR036879 GO:0003677|GO:0046983
Csa03g01662 227 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Csa03g01662 227 MobiDBLite consensus disorder prediction 158 192 - -
Csa03g01662 227 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g01662 Csa-Chr3:12441805 Csa06g00820 Csa-Chr6:6576874 4.58E-55 dispersed
Csa03g01662 Csa-Chr3:12441805 Csa06g00601 Csa-Chr6:5099335 8.86E-70 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31220 PF01486 K-box 6.30E-24 No_clan Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g01662 K09264 - csv:101212022 428.713