Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g01665 ATGGTGAGAGGAAAAGTAGAAATGAAAAGGATAGAAAATGCAACAAGTAGACAAGTAACATTCTCAAAGCGTCGAAATGGAGTATTGAAGAAAGCTTATGAACTATCTGTGCTGTGTGATGCTGAAATTGCCGTCATTATTTTCTCACAGAAAGGTCGTCTCTATGAATTTGCAAGCTCTGAGATGCCAAAGATTATGGACCGCTATCGCAAATGTACTAAAGATGCCAAAAATAATGACACTAAATTTGATAGACAGCTCTTACAGCAATTAAGGCTTGAGGTTGAAAGCATTAATAAGCAGATGGAGTTGATGCGACTTTCTCACAGGAAGCTGTTGGGTTATGGACTGGATAATTGTTCCCTTGATGAACTTGAAGTACTTGATGCTCAGCTTCAACGAAGCCTCTTCCAAATTAGGGCTAGAAAGGCTCAATTATACAATGAGCAGATACAACAACTACAAGAAAAGGAAAAACTCCTTTTGGAAGAAAACAGGATTTTGTCTTTAAAGAAAATATTTGAGAAGATTGGGAATGGAGGATGGAGTTAG 552 37.68 MVRGKVEMKRIENATSRQVTFSKRRNGVLKKAYELSVLCDAEIAVIIFSQKGRLYEFASSEMPKIMDRYRKCTKDAKNNDTKFDRQLLQQLRLEVESINKQMELMRLSHRKLLGYGLDNCSLDELEVLDAQLQRSLFQIRARKAQLYNEQIQQLQEKEKLLLEENRILSLKKIFEKIGNGGWS* 184
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 12467314 12475253 - CsaV3_3G016650.1 Csa03g01665 522570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g01665 183 CDD MADS_MEF2_like 3 78 IPR033896 GO:0000977|GO:0045944
Csa03g01665 183 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Csa03g01665 183 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Csa03g01665 183 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Csa03g01665 183 Gene3D - 14 92 IPR036879 GO:0003677|GO:0046983
Csa03g01665 183 PANTHER MADS-BOX PROTEIN SOC1 1 172 - -
Csa03g01665 183 Coils Coil 88 108 - -
Csa03g01665 183 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Csa03g01665 183 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Csa03g01665 183 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Csa03g01665 183 Pfam K-box region 89 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Csa03g01665 183 SUPERFAMILY SRF-like 3 75 IPR036879 GO:0003677|GO:0046983
Csa03g01665 183 PANTHER MADS BOX PROTEIN 1 172 - -
Csa03g01665 183 Coils Coil 144 171 - -
Csa03g01665 183 ProSiteProfiles K-box domain profile. 88 180 IPR002487 GO:0003700|GO:0005634|GO:0006355
Csa03g01665 183 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa03g01665 Csa05g00560 CCT
Csa03g01665 Csa05g00560 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g02249 Csa-Chr1:19607563 Csa03g01665 Csa-Chr3:12467314 8.12E-23 dispersed
Csa03g01665 Csa-Chr3:12467314 Csa06g00602 Csa-Chr6:5105163 1.35E-58 dispersed
Csa03g01665 Csa-Chr3:12467314 Csa05g00560 Csa-Chr5:3656105 1.39E-58 wgd
Csa03g01665 Csa-Chr3:12467314 Csa05g00336 Csa-Chr5:2144062 5.41E-53 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31221 PF01486 K-box 2.20E-19 No_clan Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g01665 - - csv:101211542 305.064