Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa03g01676 | ATGGATTCTTTTTCAACTTTTAATTATGAAGACTATTTCTCCAGTTCCGAGAGTAGTAATTGCCGTCTCCCCATTTTTTCCGATGAGGATTTTATGTTAGCCGCCAGTAATCCCAAGAAGAGGGCCGGCAGGAAGAAGTTTAAGGAGACAAGGCATCCGGTTTACAGAGGAGTCAGGAGGAGGAACTCTGGCAAGTGGGTCTGTGAAGTGAGAGAGCCCAATAAGAAGTCAAGGATTTGGCTTGGTACTTTTCCAACGGCGGAGATGGCGGCTCGAGCTCACGACGTCGCCGCCATCGCCCTTAGAGGTTTTACTGCTTGTCTCAATTTCGCCGATTCTGCGTGGCGATTGCCTGTGCCGGCGTCTGCTGATGCCAGAGATATCCAGAAGGCGGCGGCGGAGGCGGCGGAGGCTTTCAGGCCGTCAGAGTCAGATGGGTCTTCCGTAGATGACTCAAGGACGGAAAATGGGATGATGATGGAGACGACGACGCCGGAAAACTTGTTTTACATGGATGAGGAAGCAGTTTTCGGAATGCCCGGATTGTTGGAGGATATGGCTGCGGGAATGATGTTGCCTCCACCTCAGCATTTCCGTGATGACATGGATTTTTATTCTGACGTGTCATTGTGGAGCTATTAA | 642 | 50.47 | MDSFSTFNYEDYFSSSESSNCRLPIFSDEDFMLAASNPKKRAGRKKFKETRHPVYRGVRRRNSGKWVCEVREPNKKSRIWLGTFPTAEMAARAHDVAAIALRGFTACLNFADSAWRLPVPASADARDIQKAAAEAAEAFRPSESDGSSVDDSRTENGMMMETTTPENLFYMDEEAVFGMPGLLEDMAAGMMLPPPQHFRDDMDFYSDVSLWSY* | 214 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 12548365 | 12549877 | - | CsaV3_3G016760.1 | Csa03g01676 | 522581 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa03g01676 | 213 | SMART | rav1_2 | 54 | 117 | IPR001471 | GO:0003700|GO:0006355 | |
Csa03g01676 | 213 | PANTHER | DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D | 15 | 213 | IPR045277 | GO:0003700 | |
Csa03g01676 | 213 | MobiDBLite | consensus disorder prediction | 136 | 156 | - | - | |
Csa03g01676 | 213 | Pfam | AP2 domain | 53 | 103 | IPR001471 | GO:0003700|GO:0006355 | |
Csa03g01676 | 213 | ProSiteProfiles | AP2/ERF domain profile. | 54 | 111 | IPR001471 | GO:0003700|GO:0006355 | |
Csa03g01676 | 213 | PANTHER | AP2/ERF DOMAIN-CONTAINING TRANSCRIPTION FACTOR | 15 | 213 | - | - | |
Csa03g01676 | 213 | Gene3D | AP2/ERF domain | 54 | 112 | IPR036955 | GO:0003700|GO:0006355 | |
Csa03g01676 | 213 | SUPERFAMILY | DNA-binding domain | 54 | 113 | IPR016177 | GO:0003677 | |
Csa03g01676 | 213 | CDD | AP2 | 55 | 113 | IPR001471 | GO:0003700|GO:0006355 | |
Csa03g01676 | 213 | PRINTS | Ethylene responsive element binding protein signature | 55 | 66 | IPR001471 | GO:0003700|GO:0006355 | |
Csa03g01676 | 213 | PRINTS | Ethylene responsive element binding protein signature | 77 | 93 | IPR001471 | GO:0003700|GO:0006355 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Csa03g01676 | Csa05g00589 | CCT | |
Csa03g01676 | Csa05g00589 | ECH |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa03g01676 | Csa-Chr3:12548365 | Csa05g00325 | Csa-Chr5:2039646 | 6.44E-67 | dispersed | |
Csa03g01676 | Csa-Chr3:12548365 | Csa03g01677 | Csa-Chr3:12561499 | 1.80E-33 | tandem | |
Csa05g00589 | Csa-Chr5:3899628 | Csa03g01676 | Csa-Chr3:12548365 | 2.98E-80 | transposed | |
Csa03g01676 | Csa-Chr3:12548365 | Csa05g00324 | Csa-Chr5:2025742 | 1.30E-39 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
31223 | PF00847 | AP2 | 2.20E-15 | CL0081 | Csa | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa03g01676 | - | K09286 | csv:101220749 | 413.69 |