Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g01676 ATGGATTCTTTTTCAACTTTTAATTATGAAGACTATTTCTCCAGTTCCGAGAGTAGTAATTGCCGTCTCCCCATTTTTTCCGATGAGGATTTTATGTTAGCCGCCAGTAATCCCAAGAAGAGGGCCGGCAGGAAGAAGTTTAAGGAGACAAGGCATCCGGTTTACAGAGGAGTCAGGAGGAGGAACTCTGGCAAGTGGGTCTGTGAAGTGAGAGAGCCCAATAAGAAGTCAAGGATTTGGCTTGGTACTTTTCCAACGGCGGAGATGGCGGCTCGAGCTCACGACGTCGCCGCCATCGCCCTTAGAGGTTTTACTGCTTGTCTCAATTTCGCCGATTCTGCGTGGCGATTGCCTGTGCCGGCGTCTGCTGATGCCAGAGATATCCAGAAGGCGGCGGCGGAGGCGGCGGAGGCTTTCAGGCCGTCAGAGTCAGATGGGTCTTCCGTAGATGACTCAAGGACGGAAAATGGGATGATGATGGAGACGACGACGCCGGAAAACTTGTTTTACATGGATGAGGAAGCAGTTTTCGGAATGCCCGGATTGTTGGAGGATATGGCTGCGGGAATGATGTTGCCTCCACCTCAGCATTTCCGTGATGACATGGATTTTTATTCTGACGTGTCATTGTGGAGCTATTAA 642 50.47 MDSFSTFNYEDYFSSSESSNCRLPIFSDEDFMLAASNPKKRAGRKKFKETRHPVYRGVRRRNSGKWVCEVREPNKKSRIWLGTFPTAEMAARAHDVAAIALRGFTACLNFADSAWRLPVPASADARDIQKAAAEAAEAFRPSESDGSSVDDSRTENGMMMETTTPENLFYMDEEAVFGMPGLLEDMAAGMMLPPPQHFRDDMDFYSDVSLWSY* 214
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 12548365 12549877 - CsaV3_3G016760.1 Csa03g01676 522581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g01676 213 SMART rav1_2 54 117 IPR001471 GO:0003700|GO:0006355
Csa03g01676 213 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 15 213 IPR045277 GO:0003700
Csa03g01676 213 MobiDBLite consensus disorder prediction 136 156 - -
Csa03g01676 213 Pfam AP2 domain 53 103 IPR001471 GO:0003700|GO:0006355
Csa03g01676 213 ProSiteProfiles AP2/ERF domain profile. 54 111 IPR001471 GO:0003700|GO:0006355
Csa03g01676 213 PANTHER AP2/ERF DOMAIN-CONTAINING TRANSCRIPTION FACTOR 15 213 - -
Csa03g01676 213 Gene3D AP2/ERF domain 54 112 IPR036955 GO:0003700|GO:0006355
Csa03g01676 213 SUPERFAMILY DNA-binding domain 54 113 IPR016177 GO:0003677
Csa03g01676 213 CDD AP2 55 113 IPR001471 GO:0003700|GO:0006355
Csa03g01676 213 PRINTS Ethylene responsive element binding protein signature 55 66 IPR001471 GO:0003700|GO:0006355
Csa03g01676 213 PRINTS Ethylene responsive element binding protein signature 77 93 IPR001471 GO:0003700|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa03g01676 Csa05g00589 CCT
Csa03g01676 Csa05g00589 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g01676 Csa-Chr3:12548365 Csa05g00325 Csa-Chr5:2039646 6.44E-67 dispersed
Csa03g01676 Csa-Chr3:12548365 Csa03g01677 Csa-Chr3:12561499 1.80E-33 tandem
Csa05g00589 Csa-Chr5:3899628 Csa03g01676 Csa-Chr3:12548365 2.98E-80 transposed
Csa03g01676 Csa-Chr3:12548365 Csa05g00324 Csa-Chr5:2025742 1.30E-39 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31223 PF00847 AP2 2.20E-15 CL0081 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g01676 - K09286 csv:101220749 413.69