Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g01677 ATGTCTGATAATAATAATAATTCTCCCCTCCCCCCCGGTCGCCACCGCATCTTCCGAGGAATCCGTTCCCGTTCCGGCAAGTGGGTCTCTGAAATTCGGGAGCCACGTAAGGCTACTCGTATTTGGCTTGGAACTTACCCAACTCCTGAAATGGCTGCCGCCGCCTACGACGTCGCCGCCCTTACTCTCAAAGGCCCTAATGCTTCCCTTAATTTCCCTCATTCTCTTTTATCTTATCCCATTCCTCCTTCAACTTCCCCTTCTGATATTCGCGCCGCCGCCGCCATTGCTGCCGCCGCCAGAAACCCACAAGCTTCTCCTGCTACTACTTCCACTGCTACAACTACTGATTCTTCAGGGACTGAAGCGATCGATGGAGGTGGGCCGTCCTCCCATGCCACGGGGGATTGTTCCGGCAAGTTTGTGGACGAGGAAGAGTTATTGAACATGCCGAATTTACTGGTGGATATGGCGAAGGGAATGCTGTTAATGGAACTTAGCCCCAAATCTGTCACACTCCATCAAATATCTTTCTTCTCCCTCCACCAATTTTCCCATTTCTCATTTCCTTCCCCTCCCGCCTTCCAATAA 591 51.44 MSDNNNNSPLPPGRHRIFRGIRSRSGKWVSEIREPRKATRIWLGTYPTPEMAAAAYDVAALTLKGPNASLNFPHSLLSYPIPPSTSPSDIRAAAAIAAAARNPQASPATTSTATTTDSSGTEAIDGGGPSSHATGDCSGKFVDEEELLNMPNLLVDMAKGMLLMELSPKSVTLHQISFFSLHQFSHFSFPSPPAFQ* 197
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 12561499 12562491 - CsaV3_3G016770.1 Csa03g01677 522582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g01677 196 ProSiteProfiles AP2/ERF domain profile. 17 73 IPR001471 GO:0003700|GO:0006355
Csa03g01677 196 CDD AP2 17 75 IPR001471 GO:0003700|GO:0006355
Csa03g01677 196 PRINTS Ethylene responsive element binding protein signature 18 29 IPR001471 GO:0003700|GO:0006355
Csa03g01677 196 PRINTS Ethylene responsive element binding protein signature 55 75 IPR001471 GO:0003700|GO:0006355
Csa03g01677 196 SMART rav1_2 17 79 IPR001471 GO:0003700|GO:0006355
Csa03g01677 196 MobiDBLite consensus disorder prediction 103 125 - -
Csa03g01677 196 Gene3D AP2/ERF domain 17 75 IPR036955 GO:0003700|GO:0006355
Csa03g01677 196 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 10 169 - -
Csa03g01677 196 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF026 10 169 - -
Csa03g01677 196 MobiDBLite consensus disorder prediction 101 138 - -
Csa03g01677 196 Pfam AP2 domain 19 65 IPR001471 GO:0003700|GO:0006355
Csa03g01677 196 SUPERFAMILY DNA-binding domain 18 75 IPR016177 GO:0003677
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa03g01677 Csa05g00324 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g01677 Csa-Chr3:12561499 Csa05g00324 Csa-Chr5:2025742 4.77E-46 dispersed
Csa03g01676 Csa-Chr3:12548365 Csa03g01677 Csa-Chr3:12561499 1.80E-33 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31224 PF00847 AP2 7.10E-10 CL0081 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g01677 - - csv:101217355 293.893