Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g01685 ATGGCATCTTCTCGTCTGACAGGAGGATTAGCTCAGTCTCCATCGAGTTCTGGGATTTTCTACCAAGGAGAAGGGCAGTCCCCAGCCATTGTCAATTCTCATTTGAGCCAATCATTTGCAAATTCATCAAATTCAATTCCAGGAACTGGATGTTCTGATTTTGGTCCTGTTTCCGGAGACATGAACAATGCAGTTTTAGATAGTGTGGCTAATTCAGGACCCAGTGTGGGTGCAAGTTCTTTAGTTACAGATGCGAACTCCGCCCTTTCAGGGGGTCCACATTTGCAAAGGAGTGCAAGCATCAATACAGAGTCATACATGCGCTTGCCCGCATCGCCTATGTCATTCAATTCAAATAACATTAGTGTGTCAGGGTCCTCAGTTATAGATGGATCCTGCGTTGTGCAGCAAAATTCTCAACAGGACCAAAATATCCAACACATGCAGCAACAGGCACAGCAAGGTGCTTCACATGCCACATCCTTACCAACACCACAAATAGGCCAAGCATCACTTCCGATGGGCACTAAACATCAGGGATCTTTCATTCCAGATCCAAATAGTTATTCCCAGGTGCAGAAAAAACCACGACTGGATTTAAAGCCGGAAGATGTGCTGCAACAGCAAGTTTTGCAGCAGCTATTTCAGAGACAAGATTCCATGCAGTCACGTAACTCACAGTTACAAGCTTTATTTCAGCAGCAAAGAATGCGGCAGCAGCAGCAGATTTTGCAGTCTCTACCTCAATACAGGGCTCAGTTTCAGCAACAGCAGCAGATACAGTTGAGGCAACAAATGCAACAGCAGGCTATGCAACCTGTATCACCCATAAAGCGGCCCCCATATGATGCTGGTGGTGTTTGTGCTCGCCGGCTGATGCAATATTTATACCATCAGCGGCAAAGACCTCCTGAGAATAGTATAGCCTACTGGAGAAAGTTCGTAGCAGAGTATTACTCTCCTCGTGCAAAGAAAAGATGGTGCTTGTCATTGTATGAGAATGTTGGCCACCATGCTCTTGGCGTGTTTCCCCAGGCAGCTATGGATGCGTGGCAATGCGACATCTGCGGTTCTAAATCAGGAAGGGGATTTGAGGCTACATTTGAAGTACTCCCAAGACTCAGCGAGATCAAATTTGGAAGTGGAGTTATTGATGAGCTTTTATTTCTGGACCTTCCTCAAGAAAGGAGATTTGCTTCTGGAATTATGATGTTAGAATATGGAAAAGCAATTCAAGAGAGTGTATACGAGCAACTTCGTGTCATTCGTGAGGGTCAGCTTCGTATCGTATTCACACAAGACTTGAAGATTTTGTGTTGGGAATTTTGCGCTCGGCGTCATGAAGAACTTCTTCCACGGAGGTTGGTTGCACCTCAGGTAAATCAGCTGGTACAGGTTGCCCAGAAATGCCAAAGCACAATAGCTGAAAGTGGGCCTGATGGTGTTTCTCAGAAAGATTTGCAGACAAATAGCAATATGGTACTGACGGCTGGTCGTCAGCTTGCTAAGAGTCTGGAGTTGCAATTGCTGAATGACTTGGGTTTCTCTAAAAGATACGTCAGGTGTTTGCAGATATCGGAGGTTGTCAACAGTATGAAAGATCTGATTGGTTTCTGCCGGGATCAAAAAGTTGGGCCTATTGAGGGCTTGAAGAATTATCCTAGACATGCCACTGCAGCCAAGCTCCAAATGCAAAAAATGCAGGAGATGGAACAGTTGGTGAGTATTCAAGGTCTTCCCACAGACCGCAACACAATTAATAAGCTGATGACATTGCATCCTGAACTTGATAACCATGGGATGAACAACCATCAGATGATTGGTCGAGGAGGTTTCAGTGGTTCAGCACAAGCTGCTTTGGCAATGACCACATACCAGAATATTCTCATGAGACAGAACTCTATGAACTCCAACCCCAGCCCACATCAACAGGAGGCCTCCTCTTCTTTCAATACCTCTAACTATAATCCATCCCCTACACTTCAGGGGTCTACATCCCTGATACCTGGCTCAGTGCAGACCTCCTCTGTTGGTGGTTATCCAGGCAGCCAGCAACCCTTGCAAAAGCAATCGCAGCCGCCGCTGCAACAGCATCCGCCAAATACTGGAACCTTGGTCCAACAAAATCATCCTCAGATGATGCAAGGTAGCCAGGCCCTACAACAACAGATGATCCAGCAACTATTGCAGATGTCAAATAACAGTAAAAGTGGCAGTTTACAACAGCAACCCCTTACTGGACCAAATGCAAATAGAAGTATACCAAGAAGGGGTATGGCTTATGTAGGCAACACTTCTGTACCAGCTGGGGTATCTGGAAATCTATCTGGTAGCAACGTCCCTGGTCCAAGTAGGAGCAATAGCTTCAAAGCTGCTTCAAATAGCGAATCCTCTGCTGGTAACAGTGGATTCGATCAAAAGGCTTCTGATTTGCCACAACTACATTTTCCCGAGAGTTTGGTTGAAGATATAGGCCAAGATTTCCCTGAAAGCGGGTTTATTAACAATGAGCTTGATGAGCATTTGGGTTATGTGTGGAAGGCTTGA 2547 45.62 MASSRLTGGLAQSPSSSGIFYQGEGQSPAIVNSHLSQSFANSSNSIPGTGCSDFGPVSGDMNNAVLDSVANSGPSVGASSLVTDANSALSGGPHLQRSASINTESYMRLPASPMSFNSNNISVSGSSVIDGSCVVQQNSQQDQNIQHMQQQAQQGASHATSLPTPQIGQASLPMGTKHQGSFIPDPNSYSQVQKKPRLDLKPEDVLQQQVLQQLFQRQDSMQSRNSQLQALFQQQRMRQQQQILQSLPQYRAQFQQQQQIQLRQQMQQQAMQPVSPIKRPPYDAGGVCARRLMQYLYHQRQRPPENSIAYWRKFVAEYYSPRAKKRWCLSLYENVGHHALGVFPQAAMDAWQCDICGSKSGRGFEATFEVLPRLSEIKFGSGVIDELLFLDLPQERRFASGIMMLEYGKAIQESVYEQLRVIREGQLRIVFTQDLKILCWEFCARRHEELLPRRLVAPQVNQLVQVAQKCQSTIAESGPDGVSQKDLQTNSNMVLTAGRQLAKSLELQLLNDLGFSKRYVRCLQISEVVNSMKDLIGFCRDQKVGPIEGLKNYPRHATAAKLQMQKMQEMEQLVSIQGLPTDRNTINKLMTLHPELDNHGMNNHQMIGRGGFSGSAQAALAMTTYQNILMRQNSMNSNPSPHQQEASSSFNTSNYNPSPTLQGSTSLIPGSVQTSSVGGYPGSQQPLQKQSQPPLQQHPPNTGTLVQQNHPQMMQGSQALQQQMIQQLLQMSNNSKSGSLQQQPLTGPNANRSIPRRGMAYVGNTSVPAGVSGNLSGSNVPGPSRSNSFKAASNSESSAGNSGFDQKASDLPQLHFPESLVEDIGQDFPESGFINNELDEHLGYVWKA* 849
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 12638830 12646005 + CsaV3_3G016850.1 Csa03g01685 522590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g01685 848 MobiDBLite consensus disorder prediction 772 809 - -
Csa03g01685 848 MobiDBLite consensus disorder prediction 734 750 - -
Csa03g01685 848 MobiDBLite consensus disorder prediction 734 756 - -
Csa03g01685 848 MobiDBLite consensus disorder prediction 633 708 - -
Csa03g01685 848 PANTHER LIM-DOMAIN BINDING PROTEIN/SEUSS-RELATED 184 841 - -
Csa03g01685 848 PANTHER LIM-DOMAIN BINDING PROTEIN/SEUSS-RELATED 5 152 - -
Csa03g01685 848 MobiDBLite consensus disorder prediction 1 22 - -
Csa03g01685 848 MobiDBLite consensus disorder prediction 139 193 - -
Csa03g01685 848 Pfam LIM-domain binding protein 291 551 IPR029005 -
Csa03g01685 848 PANTHER LIM DOMAIN-BINDING PROTEIN 5 152 IPR029005 -
Csa03g01685 848 PANTHER LIM DOMAIN-BINDING PROTEIN 184 841 IPR029005 -
Csa03g01685 848 MobiDBLite consensus disorder prediction 772 808 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa03g01685 Csa05g00586 CCT
Csa03g01685 Csa05g00586 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g01685 Csa-Chr3:12638830 Csa06g02175 Csa-Chr6:19601789 6.52E-117 dispersed
Csa03g01685 Csa-Chr3:12638830 Csa05g00586 Csa-Chr5:3864305 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g01685 - - csv:105434391 1501.11