Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g01692 ATGGATGGTTATGGAGAAGTATGTCTGCTTGGAGATGGCTTTGATCCTACTGGAATTGTGAGGATAAGGGAAGATGAATATGATAGCAGATCAGGCAGCGACAATATCGATGGTGCTGTATCGGGGGATGATCACGATGCTAACGATGAACAACCACCAAAAAGGAAGAAGTACCATAGGCATACTCCCCATCAGATCCAAGAGCTTGAGATTTTCTTCAAGGAGTGTCCCCATCCCGATGATAAACAAAGAAATGAGCTCAGTAGAAGGCTTGGTTTGGAGACAAAGCAAGTGAAATTTTGGTTTCAAAATCGTCGAACACAGATGAAGACACAAATAGAACGACACGAGAATGCAATTCTTAAGCAAGAAAATGATAAGCTCCGGGCCGAGAATAGTGTGATGAAGGATGCTATTTCTAACCCAACGTGTAGTACTTGTGGGGGCCCTTCAATTCCTGTTCATTTATCATTTGAAGAACACCAGCTTAGGATTGAGAATGCCAGATTAAGAGAGGAACTGCATCGGTTATATGCTGTCACCAACAAGTTCTTGGGCTGGCCAGTTGTGCCGTTTGCCAATCATGGCTCTTCGCCAAGTTCTGACTCTTGCTTGGAACTTTCTGTAGGAAGAAATGGACCCGGAAATTTGAGTACCGTTTCCGATTCTATGGGGCTTAACTTGGGAAACGAACTTTTCAGTGCTGGCTCTGTGATGCCTATTAGTAAGCCTGACATAGGCATGCTAACTAATGATATACCACTTGAGAGAACAATATATGTGGATCTTGCTTTGGCAGCTATGAATGAATTGGTTAAGATGGCTCAAATGGATGGTCCCCTTTGGATCAGAAGTCGGGCCGACAGTGGCAAAGAGACATTGAACCTTGATGAATATTCAAGGACATTTCCTTCTTCGGCTGGTATGAAGCACACTAATTGGACAACAGAGGCGACCAGAGATACTACAATGGTCATCATCAACAGCTTGGCACTTGTTGAGACATTGATGGACGCAAACCGATGGGCAGAAATGTTTCCTTGTTTGATTGCTCGAGCTACTACAACCGATGTGATATCAAGTGGCATGGGTGGAACTAGAAATGGTGCATTACAATTGATGCATGCTGAACTGCGAGTGCTTTCCCCACTCGTTCCTGTTCGTACACTTAAGTTCCTCCGCTTCTGCAAGCAGCATGCTGATGGTCTATGGGCTGTAGTTGATGTTTCCATTGGAGAAGGTTCAAATTCAAACTCATTTTCCGGTTGCAAGAGACTCCCTTCAGGCTGTGTTGTGCAAGATATGCCCAATGGTTTCTCCAAGGTTACATGGGTGGAACATACAGAATATGATGAGACGGTCATACACCAGCTTTACCGCCAGTTAATTAGTTCGGGCAGCGGCTTTGGTTCACAACGGTGGCTCGCTACCCTTCAAAGACAATGCGACTGTTTGGCAATTCTTATGTCCTCTACTATCCCCACCGAAGATCCTGCAGGAATATCGCCATCTGGTAGGAGAAGTATGCTGAAGCTGTCGCAGCGTATGGTGGATAACTTCTGTTCTGGGGTTTGTAGTTCGACTTTGCATAAGTGGGACAAGCTCGTTGTAGGCAATATTAGTGAAGATGTAAAAGTGATGGCTAGAAAGAGTATCAACGATCCTGGTGAGCCACCCGGTATCGTGTTGAGTGCTGCAACTTCGGTTTGGATGCCAGTAACTCAACAGCGGTTGTTTGCATTCTTGCAAGACGAGTGCTTACGAAGTGAGTGGGATATTTTATCCAACAGCCGGCCAATGCTAGAAATGCTCCGCATCTCGAAAAGCCAGGGACCGGATAACCGTGTTTCTCTACTGTGTGCTAATCCCATGAACGCTAATGAGAACACAATGTTCATATTGCAAGAGACTTGGACTGATGTATCAGGCTCACTGGTTGTTTTCGCTCCAGTCGACACATCGTCGGTTAATTTGGTAATGCGTGGAGGAGATTCTGCTTATGTATCACTATTACCATCAGGATTTGCAATTCTCCCCATTGATCAATCCAACTATGCTTGTACAAACGGCGAAGACGCAACAGTCAAGTCAAGCATTAACAGTGGCCATGGTGGTGCATGTCTCCTCACAGTTGCATTCCAGATTTTGGTGAATAGCCTTCCAACTGCCAAACTCACCGTCGAGTCAGTTGAGACAGTTAACCATCTCATTTCTTGCACCATCCAGAAGATCAAAGCTGCCCTTCAAGTATCGTAA 2256 45.17 MDGYGEVCLLGDGFDPTGIVRIREDEYDSRSGSDNIDGAVSGDDHDANDEQPPKRKKYHRHTPHQIQELEIFFKECPHPDDKQRNELSRRLGLETKQVKFWFQNRRTQMKTQIERHENAILKQENDKLRAENSVMKDAISNPTCSTCGGPSIPVHLSFEEHQLRIENARLREELHRLYAVTNKFLGWPVVPFANHGSSPSSDSCLELSVGRNGPGNLSTVSDSMGLNLGNELFSAGSVMPISKPDIGMLTNDIPLERTIYVDLALAAMNELVKMAQMDGPLWIRSRADSGKETLNLDEYSRTFPSSAGMKHTNWTTEATRDTTMVIINSLALVETLMDANRWAEMFPCLIARATTTDVISSGMGGTRNGALQLMHAELRVLSPLVPVRTLKFLRFCKQHADGLWAVVDVSIGEGSNSNSFSGCKRLPSGCVVQDMPNGFSKVTWVEHTEYDETVIHQLYRQLISSGSGFGSQRWLATLQRQCDCLAILMSSTIPTEDPAGISPSGRRSMLKLSQRMVDNFCSGVCSSTLHKWDKLVVGNISEDVKVMARKSINDPGEPPGIVLSAATSVWMPVTQQRLFAFLQDECLRSEWDILSNSRPMLEMLRISKSQGPDNRVSLLCANPMNANENTMFILQETWTDVSGSLVVFAPVDTSSVNLVMRGGDSAYVSLLPSGFAILPIDQSNYACTNGEDATVKSSINSGHGGACLLTVAFQILVNSLPTAKLTVESVETVNHLISCTIQKIKAALQVS* 752
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 12676781 12682846 + CsaV3_3G016920.1 Csa03g01692 522597
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g01692 751 SMART START_1 262 484 IPR002913 GO:0008289
Csa03g01692 751 Pfam START domain 263 483 IPR002913 GO:0008289
Csa03g01692 751 MobiDBLite consensus disorder prediction 24 62 - -
Csa03g01692 751 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HDG1 17 749 - -
Csa03g01692 751 Coils Coil 106 138 - -
Csa03g01692 751 ProSiteProfiles START domain profile. 253 487 IPR002913 GO:0008289
Csa03g01692 751 SUPERFAMILY Bet v1-like 512 745 - -
Csa03g01692 751 SUPERFAMILY Bet v1-like 254 484 - -
Csa03g01692 751 SMART HOX_1 54 116 IPR001356 GO:0003677
Csa03g01692 751 CDD homeodomain 55 112 IPR001356 GO:0003677
Csa03g01692 751 Gene3D - 41 128 - -
Csa03g01692 751 Pfam Homeodomain 55 110 IPR001356 GO:0003677
Csa03g01692 751 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 17 749 IPR042160 -
Csa03g01692 751 CDD START_ArGLABRA2_like 262 482 - -
Csa03g01692 751 SUPERFAMILY Homeodomain-like 39 112 IPR009057 -
Csa03g01692 751 ProSiteProfiles 'Homeobox' domain profile. 52 112 IPR001356 GO:0003677
Csa03g01692 751 ProSitePatterns 'Homeobox' domain signature. 87 110 IPR017970 GO:0000981|GO:0006355
Csa03g01692 751 MobiDBLite consensus disorder prediction 39 56 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g01692 Csa-Chr3:12676781 Csa07g00370 Csa-Chr7:2759169 0 dispersed
Csa03g01692 Csa-Chr3:12676781 Csa06g00579 Csa-Chr6:4976972 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31227 PF01852 START 1.80E-47 CL0209 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g01692 K09338 - csv:101218216 1512.28