Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g01693 ATGTCAAGGAGCTGTAGTAATATTAGTATAATAGAGCCGTTAATAGTGGGAAGAGTAGTAGGAGATGTGGTTGATAATTTCGTTCCAAATGTGAAAATGAATGTTATTTACAATTCCTCTAAACAAGTCGCCAATGGCCACGAGCTTCTCCCTTCTCTTATTTCCTTTAAACCTCGCGTTGAAGTTGCCGGCGACGACATGAGATCAGCTTTCACTTTGATTATGGTCGACCCAGATGCTCCAAGCCCAAGTGATCCTTATCTTAGGGAATACCTTCACTGGATGGTCACGGACATCCCTGGTACCACTGATGCTTCTTTTGGGAAGGAGATAATGAGTTACGAGAGTCCAAAGCCACATATTGGGATTCATCGCTATGTGTTTGTGTTGTTCAAGCAACGAGGAAGACAGACTGTGAGATTATCCTCCTCCTCCTCCTCGTCTTCAAGAGCCAATTTTAATACTAGACACTTCTCTGAAGCCAATGGCCTGGGCCTCCCCGTTGCCGCTGTTTATTTCAATGCTCAAAGAGAAACCGCCGCTAGAAGAAAATGA 555 44.14 MSRSCSNISIIEPLIVGRVVGDVVDNFVPNVKMNVIYNSSKQVANGHELLPSLISFKPRVEVAGDDMRSAFTLIMVDPDAPSPSDPYLREYLHWMVTDIPGTTDASFGKEIMSYESPKPHIGIHRYVFVLFKQRGRQTVRLSSSSSSSSRANFNTRHFSEANGLGLPVAAVYFNAQRETAARRK* 185
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 12686165 12687225 - CsaV3_3G016930.1 Csa03g01693 522598

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g01693 184 ProSitePatterns Phosphatidylethanolamine-binding protein family signature. 71 93 IPR001858 -
Csa03g01693 184 Pfam Phosphatidylethanolamine-binding protein 58 173 IPR008914 -
Csa03g01693 184 CDD PEBP_euk 31 175 IPR035810 -
Csa03g01693 184 Gene3D - 6 184 IPR036610 -
Csa03g01693 184 SUPERFAMILY PEBP-like 18 178 IPR036610 -
Csa03g01693 184 PANTHER CEN-LIKE PROTEIN 1 10 183 - -
Csa03g01693 184 PANTHER PHOSPHATIDYLETHANOLAMINE-BINDING PROTEIN 10 183 IPR035810 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g01693 K06910 PEBP, TFS1; phosphatidylethanolamine-binding protein - csv:101218688 362.073
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g01693 Csa-Chr3:12686165 Csa03g03413 Csa-Chr3:30774795 1.03E-86 dispersed
Csa03g01693 Csa-Chr3:12686165 Csa06g02678 Csa-Chr6:23541336 2.12E-84 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g618 . . Bda05g00059 . Bpe03g00295 . Bma10g01214 . Cmo16g00145 . . . . . Sed07g1050 . Cpe14g00117 Bhi01g01345 Tan01g0271 Cmetu06g0928 . Hepe07g0175 Mch10g0171 . . . . . . . . . . . . Lsi05g01247 . . Cme06g00979 Blo07g00420 . . . . . . . . . . Cma16g00139 . Car16g00123 . . . . . . . . . . Cla05g00863 Cam05g0950 Cec05g0955 Cco05g0955 Clacu05g0937 Cmu05g0895 Cre05g0979 . Csa03g01693 Chy06g00927 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000405 2 8 2 3 3 4 5 4 4 4 4 4 5 4 3 4 4 8 5 4 4 5 4 4 3 4 4 5 5 3 125