Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g01694 ATGGTTTTTCTTATGGGTATGGAGTTGAAACGCTTCTTTTTTATTTTCATCATCTGCTTCGACCTCTGCATTTTGAGTTCCAATGGCGCTACACTCCAGAATGAGATTATTATCGAGAGAGAAAGCTTGGTTTCTTTCAAAGCTTCGTTGGAGACCTCTGAAATTCTGCCATGGAACTCATCGGTTCCTCACTGCTTTTGGGTCGGAGTTTCTTGTCGACTCGGTCGAGTTACAGAGCTCTCTCTTTCGTCTCTTTCACTCAAAGGCCAACTATCTCGGTCCCTTTTCGATCTTTTGAGCCTCTCTGTTCTTGACCTTTCAAACAACTTACTCTATGGCTCAATACCACCTCAGATATATAATCTTCGGAGCCTGAAGGTTCTCGCTCTCGGTGAAAATCAGTTTTCCGGCGACTTCCCTATCGAGCTCACTGAGTTGACTCAACTGGAGAATCTCAAGTTGGGGGCTAATTTATTCTCAGGTAAAATCCCGCCGGAGCTTGGAAATTTGAAGCAGTTACGGACCCTTGACCTCTCCAGCAATGCCTTCGTCGGAAATGTTCCGCCCCACATCGGAAACTTGACGAAGATTTTATCCTTGGACCTCGGCAACAATCTTTTATCAGGTTCACTCCCATTGACCATCTTTACTGAGCTTACATCTTTAACTTCTCTAGACATTTCAAACAACTCCTTTTCGGGTTCAATCCCACCTGAAATTGGTAATCTAAAGCATTTGGCTGGCCTTTATATCGGCATTAACCATTTTTCCGGTGAGTTGCCTCCTGAAGTTGGTAACCTTGTATTGCTGGAGAACTTTTTTTCGCCGTCTTGTTCTCTAACTGGTCCATTGCCTGATGAACTATCCAAGCTGAAATCATTGAGCAAACTGGATCTTTCATACAACCCACTTGGGTGTTCAATCCCGAAAACGATTGGTGAATTGCAGAACTTGACTATATTGAATTTGGTTTACACTGAGCTTAATGGTTCTATACCTGCTGAGCTTGGGAGGTGTAGAAATTTGAAAACATTGATGCTTTCGTTCAACTATCTATCTGGGGTGTTGCCACCAGAGCTTTCCGAGCTTTCCATGTTGACATTTTCCGCTGAGAGGAATCAGCTTTCTGGGCCATTACCTTCTTGGTTTGGCAAATGGGATCATGTCGATTCTATTTTACTTTCGAGTAATCGATTTACTGGCGGAATCCCACCTGAGATTGGAAATTGTTCGAAGCTTAATCACCTTAGTTTGAGCAATAACTTGTTGACAGGTCCAATACCTAAAGAAATATGTAATGCTGCATCCTTGATGGAGATTGATCTTGACAGTAATTTCCTTTCGGGTACTATTGATGACACATTTGTGACGTGTAAAAACCTTACACAGTTGGTTTTGGTAGACAATCAGATCGTTGGTGCAATACCGGAGTACTTCTCAGACCTTCCCCTACTGGTTATCAACCTTGACGCCAACAATTTTACAGGTTATTTACCAACAAGTATATGGAACTCAGTGGATTTGATGGAATTTTCCGCTGCAAATAACCAGTTAGAGGGTCATCTCCCTCCAGAAATTGGTTATGCAGCTTCCCTTGAGAGGCTTGTCCTCAGCAACAACAGGTTGACAGGCATAATACCAGATGAAATTGGAAATCTCACAGCCCTTTCTGTTCTAAATTTGAATTCAAATCTGCTCGAAGGAACTATTCCTGCCATGCTTGGAGATTGCAGTGCACTTACCACATTAGACCTTGGAAACAACAGTTTAAACGGATCGATTCCAGAAAAACTTGCAGACCTTTCTGAATTACAGTGCTTAGTTCTTTCGCACAACAATTTATCTGGAGCAATACCATCCAAGCCATCAGCTTATTTTCGACAGTTGACCATTCCTGATTTGAGCTTTGTTCAGCATCATGGAGTTTTCGATCTGTCTCATAATAGATTGTCTGGTACCATACCTGATGAACTGGGGAACTGTGTTGTGGTGGTGGATCTTTTACTCAACAATAATCTACTTTCTGGAGCAATACCTAGTTCTCTCTCTCAGTTAACAAACCTCACAACCTTGGACTTATCTAGCAATACGCTTACTGGTCCTATTCCTGCAGAGATTGGCAAGGCACTCAAGCTTCAAGGCTTGTATCTTGGGAATAATCGCCTTATGGGAATGATCCCAGAAAGCTTCAGTCATTTGAATAGCTTGGTAAAGTTGAACTTAACTGGTAATAGGTTGTCTGGTTCGGTTCCAAAAACGTTTGGTGGTCTGAAAGCTCTAACTCATTTGGATTTAAGTTGTAATGAGTTGGATGGTGATCTTCCTTCTTCTCTGTCCAGCATGTTGAATCTTGTCGGGCTTTATGTACAGGAGAACAGGCTTTCTGGTCAGGTTGTTGAACTTTTCCCAAGTTCCATGTCATGGAAGATTGAAACTTTGAATTTGAGTGATAATTATTTAGAGGGTGTACTTCCACGAACATTGGGCAACCTATCATACTTGACGACTTTGGATCTTCATGGAAATAAGTTCGCAGGGACAATCCCTTCAGATCTTGGGGATCTTATGCAACTTGAATACTTAGATGTCTCGAACAACAGCCTTTCAGGGGAGATTCCAGAGAAAATATGCAGCCTCGTCAATATGTTTTACCTGAATTTGGCTGAAAATAGTCTTGAAGGTCCAATTCCGAGAAGTGGGATTTGCCAGAATCTATCCAAAAGTTCACTTGTCGGTAACAAGGATCTTTGTGGGAGAATCCTGGGTTTCAATTGCCGGATCAAAAGCTTAGAGAGATCTGCAGTCTTAAATTCTTGGAGTGTTGCTGGGATTATCATTGTTAGCGTTCTTATCGTTCTAACTGTGGCATTCGCAATGCGAAGACGGATCATTGGAATCCAGAGAGATAGTGATCCAGAGGAAATGGAGGAAAGCAAATTAAACAGTTTCATAGACCCCAATCTCTATTTCTTAAGTAGCAGCAGATCAAAAGAGCCTTTAAGCATCAATGTGGCTATGTTCGAGCAGCCCCTTCTGAAGTTAACTTTGGTTGATATCCTGGAAGCGACCAATAACTTCTGTAAAACTAACATTATTGGAGATGGAGGATTCGGGACCGTCTACAAGGCAACTTTGCCTGATGGAAAAGTTGTTGCTGTGAAGAAGCTAAGCGAAGCAAAAACACAAGGGCATAGAGAATTTATTGCTGAAATGGAAACTATAGGAAAAGTGAAGCATCATAATCTTGTTCCACTGCTTGGCTACTGTTCTCTTGGGGAGGAGAAGCTCCTTGTGTATGAGTATATGGTGAATGGTAGCTTAGATCTTTGGCTGAGAAACCGAACCGGTACTCTCGAAATCCTCAATTGGGAGACTCGCTTCAAAGTTGCTTCAGGTGCAGCCCGTGGACTGGCATTTCTTCACCATGGATTCATTCCCCACATCATTCATAGAGATGTTAAAGCAAGCAATATACTCCTCAACCAAGACTTTGAACCAAAAGTTGCTGACTTTGGATTAGCAAGATTGATCAGTGCTTGTGAAACTCATGTCACAACTGAGATTGCTGGAACGTTTGGTTACATCCCACCGGAGTACGGGCAGAGTGGGAGGTCGACAACAAAAGGTGATGTGTATAGCTTTGGTGTGATTCTACTGGAATTGGTAACTGGGAAGGAACCAACTGGACCTGACTTTAAAGAGATTGAGGGTGGAAATCTAGTTGGTTGGGTGTTTCAGAAGATCAACAAGGGCCAAGCTGCAGATGTTCTTGATGCCACAGTTCTGAATGCTGACTCAAAGCATATGATGCTTCAAACCCTTCAGATTGCCTGTGTTTGCTTGTCAGAAAATCCTGCTAATAGACCTTCCATGCTTCAGGTATTGAAGTTTCTTAAAGGGATCAAAGATGAGTAA 3915 42.3 MVFLMGMELKRFFFIFIICFDLCILSSNGATLQNEIIIERESLVSFKASLETSEILPWNSSVPHCFWVGVSCRLGRVTELSLSSLSLKGQLSRSLFDLLSLSVLDLSNNLLYGSIPPQIYNLRSLKVLALGENQFSGDFPIELTELTQLENLKLGANLFSGKIPPELGNLKQLRTLDLSSNAFVGNVPPHIGNLTKILSLDLGNNLLSGSLPLTIFTELTSLTSLDISNNSFSGSIPPEIGNLKHLAGLYIGINHFSGELPPEVGNLVLLENFFSPSCSLTGPLPDELSKLKSLSKLDLSYNPLGCSIPKTIGELQNLTILNLVYTELNGSIPAELGRCRNLKTLMLSFNYLSGVLPPELSELSMLTFSAERNQLSGPLPSWFGKWDHVDSILLSSNRFTGGIPPEIGNCSKLNHLSLSNNLLTGPIPKEICNAASLMEIDLDSNFLSGTIDDTFVTCKNLTQLVLVDNQIVGAIPEYFSDLPLLVINLDANNFTGYLPTSIWNSVDLMEFSAANNQLEGHLPPEIGYAASLERLVLSNNRLTGIIPDEIGNLTALSVLNLNSNLLEGTIPAMLGDCSALTTLDLGNNSLNGSIPEKLADLSELQCLVLSHNNLSGAIPSKPSAYFRQLTIPDLSFVQHHGVFDLSHNRLSGTIPDELGNCVVVVDLLLNNNLLSGAIPSSLSQLTNLTTLDLSSNTLTGPIPAEIGKALKLQGLYLGNNRLMGMIPESFSHLNSLVKLNLTGNRLSGSVPKTFGGLKALTHLDLSCNELDGDLPSSLSSMLNLVGLYVQENRLSGQVVELFPSSMSWKIETLNLSDNYLEGVLPRTLGNLSYLTTLDLHGNKFAGTIPSDLGDLMQLEYLDVSNNSLSGEIPEKICSLVNMFYLNLAENSLEGPIPRSGICQNLSKSSLVGNKDLCGRILGFNCRIKSLERSAVLNSWSVAGIIIVSVLIVLTVAFAMRRRIIGIQRDSDPEEMEESKLNSFIDPNLYFLSSSRSKEPLSINVAMFEQPLLKLTLVDILEATNNFCKTNIIGDGGFGTVYKATLPDGKVVAVKKLSEAKTQGHREFIAEMETIGKVKHHNLVPLLGYCSLGEEKLLVYEYMVNGSLDLWLRNRTGTLEILNWETRFKVASGAARGLAFLHHGFIPHIIHRDVKASNILLNQDFEPKVADFGLARLISACETHVTTEIAGTFGYIPPEYGQSGRSTTKGDVYSFGVILLELVTGKEPTGPDFKEIEGGNLVGWVFQKINKGQAADVLDATVLNADSKHMMLQTLQIACVCLSENPANRPSMLQVLKFLKGIKDE* 1305
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 12733319 12737788 + CsaV3_3G016940.1 Csa03g01694 522599
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g01694 1304 Pfam Leucine rich repeat 556 614 IPR001611 GO:0005515
Csa03g01694 1304 Pfam Leucine rich repeat 436 494 IPR001611 GO:0005515
Csa03g01694 1304 SUPERFAMILY L domain-like 61 367 - -
Csa03g01694 1304 SMART LRR_sd22_2 170 196 - -
Csa03g01694 1304 SMART LRR_sd22_2 685 717 - -
Csa03g01694 1304 SMART LRR_sd22_2 98 124 - -
Csa03g01694 1304 SMART LRR_sd22_2 577 603 - -
Csa03g01694 1304 SMART LRR_sd22_2 219 245 - -
Csa03g01694 1304 SMART LRR_sd22_2 757 786 - -
Csa03g01694 1304 SMART LRR_sd22_2 410 436 - -
Csa03g01694 1304 SMART LRR_sd22_2 291 317 - -
Csa03g01694 1304 SMART LRR_sd22_2 458 484 - -
Csa03g01694 1304 SMART LRR_sd22_2 855 881 - -
Csa03g01694 1304 Gene3D Ribonuclease Inhibitor 218 368 IPR032675 -
Csa03g01694 1304 Gene3D Ribonuclease Inhibitor 630 928 IPR032675 -
Csa03g01694 1304 SUPERFAMILY Protein kinase-like (PK-like) 1007 1298 IPR011009 -
Csa03g01694 1304 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 959 1304 - -
Csa03g01694 1304 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 456 524 - -
Csa03g01694 1304 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 379 457 - -
Csa03g01694 1304 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 518 574 - -
Csa03g01694 1304 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 74 140 - -
Csa03g01694 1304 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 579 791 - -
Csa03g01694 1304 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 863 930 - -
Csa03g01694 1304 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 138 347 - -
Csa03g01694 1304 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 810 897 - -
Csa03g01694 1304 Gene3D Phosphorylase Kinase; domain 1 989 1101 - -
Csa03g01694 1304 Gene3D Ribonuclease Inhibitor 145 217 IPR032675 -
Csa03g01694 1304 Pfam Protein tyrosine and serine/threonine kinase 1030 1298 IPR001245 GO:0004672|GO:0006468
Csa03g01694 1304 SUPERFAMILY L domain-like 372 636 - -
Csa03g01694 1304 Gene3D Transferase(Phosphotransferase) domain 1 1102 1304 - -
Csa03g01694 1304 SUPERFAMILY L domain-like 627 918 - -
Csa03g01694 1304 ProSitePatterns Protein kinases ATP-binding region signature. 1032 1055 IPR017441 GO:0005524
Csa03g01694 1304 Pfam Leucine Rich Repeat 221 243 IPR001611 GO:0005515
Csa03g01694 1304 Pfam Leucine Rich Repeat 531 553 IPR001611 GO:0005515
Csa03g01694 1304 Pfam Leucine Rich Repeat 760 780 IPR001611 GO:0005515
Csa03g01694 1304 Pfam Leucine Rich Repeat 809 831 IPR001611 GO:0005515
Csa03g01694 1304 Pfam Leucine Rich Repeat 857 879 IPR001611 GO:0005515
Csa03g01694 1304 ProSiteProfiles Protein kinase domain profile. 1026 1304 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa03g01694 1304 Pfam Leucine rich repeat N-terminal domain 39 72 IPR013210 -
Csa03g01694 1304 Gene3D Ribonuclease Inhibitor 369 629 IPR032675 -
Csa03g01694 1304 Gene3D Ribonuclease Inhibitor 38 144 IPR032675 -
Csa03g01694 1304 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1148 1160 IPR008271 GO:0004672|GO:0006468
Csa03g01694 1304 SMART LRR_typ_2 194 218 IPR003591 -
Csa03g01694 1304 SMART LRR_typ_2 219 243 IPR003591 -
Csa03g01694 1304 SMART LRR_typ_2 831 854 IPR003591 -
Csa03g01694 1304 SMART LRR_typ_2 757 781 IPR003591 -
Csa03g01694 1304 SMART LRR_typ_2 530 552 IPR003591 -
Csa03g01694 1304 SMART LRR_typ_2 291 315 IPR003591 -
Csa03g01694 1304 SMART LRR_typ_2 339 363 IPR003591 -
Csa03g01694 1304 SMART LRR_typ_2 553 577 IPR003591 -
Csa03g01694 1304 SMART LRR_typ_2 170 193 IPR003591 -
Csa03g01694 1304 SMART LRR_typ_2 601 627 IPR003591 -
Csa03g01694 1304 SMART LRR_typ_2 685 709 IPR003591 -
Csa03g01694 1304 SMART LRR_typ_2 98 122 IPR003591 -
Csa03g01694 1304 SMART LRR_typ_2 733 756 IPR003591 -
Csa03g01694 1304 SMART LRR_typ_2 855 879 IPR003591 -
Csa03g01694 1304 SMART LRR_typ_2 711 732 IPR003591 -
Csa03g01694 1304 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 456 524 - -
Csa03g01694 1304 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 959 1304 - -
Csa03g01694 1304 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 74 140 - -
Csa03g01694 1304 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 379 457 - -
Csa03g01694 1304 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 863 930 - -
Csa03g01694 1304 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 518 574 - -
Csa03g01694 1304 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 579 791 - -
Csa03g01694 1304 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 810 897 - -
Csa03g01694 1304 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 138 347 - -
Csa03g01694 1304 SMART serkin_6 1026 1298 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa03g01694 1304 PRINTS Leucine-rich repeat signature 222 235 - -
Csa03g01694 1304 PRINTS Leucine-rich repeat signature 685 698 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g02317 Csa-Chr1:20272721 Csa03g01694 Csa-Chr3:12733319 6.17E-06 dispersed
Csa03g01694 Csa-Chr3:12733319 Csa01g00996 Csa-Chr1:6196854 2.88E-31 dispersed
Csa03g03488 Csa-Chr3:31226510 Csa03g01694 Csa-Chr3:12733319 8.06E-16 dispersed
Csa06g00448 Csa-Chr6:3835957 Csa03g01694 Csa-Chr3:12733319 1.26E-13 dispersed
Csa06g00932 Csa-Chr6:7480747 Csa03g01694 Csa-Chr3:12733319 1.00E-06 dispersed
Csa03g01694 Csa-Chr3:12733319 Csa02g00996 Csa-Chr2:9583496 5.27E-71 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77992 PF07714 PK_Tyr_Ser-Thr 9.50E-46 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g01694 - - csv:101215443 2451.01