Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g01702 ATGGGGAAACAGAAGCAACAAGTGATCTCTCGATTCTTTGCTCCAAAACCCAAGTCCCCTTCTCTTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCTCCTCTGCCACCGCCGCCGACATAACTCCGCCGACCCAACCGTTTTCACCTGCTAAGGTATCGGCTACAGTCACTTTCTCCCCTTCCAAACGCCTCATTTCTTCTGCCATCGCCTCTCAGTTAACACCGCCCAAATCCTCTAAACGCCCAAAACTCTCGCCTCACACCCACAACCCTCTACCTTCCATCCCCAATCCCTCACTTCACCAAAGATTTCTCGACAAGCTCCTTGAACCCACGGATGACTCTTTCCAACCTTCTAATCAAAACCCCAGAACCTCAAATGGTGCTGATCCCAAATACAAATACACACCTTTGGAACAACAGGTTGTGGACCTTAAGAAGAGGTACCCTGATGTTCTTCTCATGGTGGAGGTTGGTTATAGGTACAGATTTTTTGGCCAAGATGCTGTAATAGCGGCTCGTGTTTTGGGTATTTATGCTCATTTGGATCATAATTTTATGACTGCGAGTATACCCACCTTTAGATTGAATGTGCACGTGAGAAGGCTGGTTAGTGCAGGGTATAAGGTGGGTGTTGTCAAGCAAACTGAAACTGCTGCGATTAAGGCTCATGGGTCGAATAAGTTGGGCCCGTTTTGTAGGGGATTATCGGCTTTGTATACTAAAGCAACATTGGAGGCAGCACAGGATTTAGGGGGAGCTGAAGAGGGATGTGCTGGGGAGAGTAATTACTTGTTCTGTTTGGTTGAAAATAGTATGTCGGTGCAAAATGTGGACTGTAGAATCGAAAATGGGGTTGATGTGAAAATTGGGATGGTTGCCATGGAGATATCAACTGGGGATGTTATTTATGGGGAATATGACGATAACTTTATGAGAAATGGACTTGAGGCAATGCTCTTGAGCCTGTCTCCTGCTGAGTTACTTCTTGGAGATCCCATATCAAAGCCAACAGAGAAGTTATTGCTAGGTTATGCTGGACCTGCTTTGAATGTCCGTGTGGAGCGTGTATCGGGAGATTGCTTTAAAGATGGCAGTGCACTTGCTGAAGTGATGTCTTTGTATGAAAACATTGACCAAAATAACTTCACTGAAGATAACAACCCTGAAAAAGTGTTGGTTGGACAAAAAAGTAACCGCTCAGCAATTAAGGAAATAGTGAACATGCCAAATTTAGCTCTTCAAGCATTGGCCTTAACCATTCGTCACTTGAAGCAATTTGGTTTAGAAAGGATTGTGTCTTTGGCATCTTCTTTTAGGCCATTCTCATGCAAAATGGAGATGACCCTCTCAGGCAATACGCTTACACAACTCGAGGTTTTGAAGAATAATGATGACGGTTCTGAAACTGGATCTTTATTACATTGCATGAATCATACTCTTACAATATTTGGCTCAAGGCTTCTTCGCCAATGGATAACACATCCTTTATGTGATAGAAACATGATAATTGCTCGTCAAGAGGCTGTTTCTGAGATTGCTGCATCTATGGTATCTTCAAAAGTATCTCCAAATAACAGAGCGTTGGATGAAGAATATTCTGATGTCATTGTCATTGAACCAGAATTGAATTACATACTTTCTTCTGTGTTGACAACCTTGGGAAGGGCACCAGATATTCAGCGTGGAATAACAAGAATCTTTCACCGAACAGCAGCCCCATCAGAGTTCATTGCAGTTATTCAAGCTATTTTATTTGCGGGAAAACAGCTTCAGCAGTTTCACATTGATGAAGAAGATGACAATTGTTCCAGTGAAAGTATTATTGGCTCCAAGCTCCTAAGAAAGCTGATTTTATCTGCTTCTTCCTCTGGTTTAATAAACATTGCTGCAAAGCTTTTGTCAACGATCAGCAAAGAAGCTGCAGATCAAGGGGACTTTCCAAACCTAATGATCATCTACAGTGACCAATTTCCAAAGGTTGCTAGAGCTCGGAAGGAGGCTCAATCTGCAAGAGAGAAATTGGATGCTCTGATCACCTTCTACCGCAAGCAGCTTGGAATGCGGAAGTTGGAGTTCACTAGTGTGTCTGGAACTACACATTTGATTGAGCTAGCCATAGATGTAAAGGTGCCTTCACAGTGGGTTAAGATCAATAGTACCAAGAAAACTGTAAGGTATCACCCACCTGAAGTATTGGCTGCATTAGATGAGCTATCACTGGCAAATGAAGAGCTCATGGTTGCGTCTCGTGATGCTTGGGATGACTTTCTGAGAGGATTCAGCAGATATTATGCAGAGTTTCAAGCTGCTGTTCAAGCATTGGCTTCCATAGACTGTCTGTATTCGTTAGCAATCCTCTCAAGAAATAAGAACTATGCTCGCCCAGAGTTTGTACCTGATGATGAACCTGCCCAGATACATTTATGTTCTGGACGCCATCCGGTTTTGGAAGGTACATTACAAGGCAATTTTGTCCCAAACGACACAAATTTGGACGCGAATGGAGAGCATTGTCAAATTGTAACAGGACCGAACATGGGTGGAAAAAGTTGCTACATTCGACAAGTTGCTCTCATTGCTCTAATGTCTCAGGTGGGTTCCTTTGTACCAGCATTCTCTGCGAAACTTCATGTCCTGGACGGTATATACACTCGAATGGGTGCTTCTGACAGTATTCAACAAGGTAGAAGCACCTTCTTAGAAGAAATGACTGAGACTTCACATATACTCCGTCATTCCTCATCACGTTCCTTGGTCATAATTGATGAACTTGGGAGAGGTACAAGCACCCACGATGGTGTGGCCATTGCATACGCAGCTCTGCATAGTCTACTCCAGCAGAAGAAATGTTTGGTTCTCTTTGTCACCCACTATCCCAAAGTTGCTGAGATTGCAAAGGAATTCCCAGCATCTGCGGGGGTATACCATGTTTCATATCTTACATCACACAAAAGTCCAAGCTTGTCAGGCCCAAAATCAACTGAGGATGTGACTTACTTGTATAAGCTCATTTCTGGTGTTGCGGAGAGTAGTTTTGGTTTCAAAGTAGCACAACTTGCACAGATACCTTTATCGTGTATTGCACGGGCCACAGAAATGGGGGTCTGGTTGGAAGAAATAGTAACAAGAAGAGCACAGCGCAAATCCACAGAACAACATTTGGCAGAAGCATCAGTTAAGGGATTGGAATGGCAAAGCTTCCAGTCCTTCCTCGAGAGAATTGATGGTTATGAGGAATTCTTTCTATTCTTGAAAGCTACAGTACGTTCTGCTGATGTGGGAACATGGTGCCATCAAATTTACCAAGCTAGAAGCATGGCCATGGACTTGTTAGGAAGGTGA 3345 43.38 MGKQKQQVISRFFAPKPKSPSLSSSSSSSSSSSSATAADITPPTQPFSPAKVSATVTFSPSKRLISSAIASQLTPPKSSKRPKLSPHTHNPLPSIPNPSLHQRFLDKLLEPTDDSFQPSNQNPRTSNGADPKYKYTPLEQQVVDLKKRYPDVLLMVEVGYRYRFFGQDAVIAARVLGIYAHLDHNFMTASIPTFRLNVHVRRLVSAGYKVGVVKQTETAAIKAHGSNKLGPFCRGLSALYTKATLEAAQDLGGAEEGCAGESNYLFCLVENSMSVQNVDCRIENGVDVKIGMVAMEISTGDVIYGEYDDNFMRNGLEAMLLSLSPAELLLGDPISKPTEKLLLGYAGPALNVRVERVSGDCFKDGSALAEVMSLYENIDQNNFTEDNNPEKVLVGQKSNRSAIKEIVNMPNLALQALALTIRHLKQFGLERIVSLASSFRPFSCKMEMTLSGNTLTQLEVLKNNDDGSETGSLLHCMNHTLTIFGSRLLRQWITHPLCDRNMIIARQEAVSEIAASMVSSKVSPNNRALDEEYSDVIVIEPELNYILSSVLTTLGRAPDIQRGITRIFHRTAAPSEFIAVIQAILFAGKQLQQFHIDEEDDNCSSESIIGSKLLRKLILSASSSGLINIAAKLLSTISKEAADQGDFPNLMIIYSDQFPKVARARKEAQSAREKLDALITFYRKQLGMRKLEFTSVSGTTHLIELAIDVKVPSQWVKINSTKKTVRYHPPEVLAALDELSLANEELMVASRDAWDDFLRGFSRYYAEFQAAVQALASIDCLYSLAILSRNKNYARPEFVPDDEPAQIHLCSGRHPVLEGTLQGNFVPNDTNLDANGEHCQIVTGPNMGGKSCYIRQVALIALMSQVGSFVPAFSAKLHVLDGIYTRMGASDSIQQGRSTFLEEMTETSHILRHSSSRSLVIIDELGRGTSTHDGVAIAYAALHSLLQQKKCLVLFVTHYPKVAEIAKEFPASAGVYHVSYLTSHKSPSLSGPKSTEDVTYLYKLISGVAESSFGFKVAQLAQIPLSCIARATEMGVWLEEIVTRRAQRKSTEQHLAEASVKGLEWQSFQSFLERIDGYEEFFLFLKATVRSADVGTWCHQIYQARSMAMDLLGR* 1115
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 12778406 12785484 - CsaV3_3G017020.1 Csa03g01702 522607

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g01702 1114 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 793 1035 IPR027417 -
Csa03g01702 1114 Pfam MutS domain I 136 246 IPR007695 GO:0005524|GO:0006298|GO:0030983
Csa03g01702 1114 MobiDBLite consensus disorder prediction 17 53 - -
Csa03g01702 1114 SUPERFAMILY DNA repair protein MutS, domain I 131 244 IPR016151 GO:0005524|GO:0006298|GO:0030983
Csa03g01702 1114 ProSitePatterns DNA mismatch repair proteins mutS family signature. 918 934 IPR000432 GO:0005524|GO:0006298|GO:0030983
Csa03g01702 1114 SUPERFAMILY DNA repair protein MutS, domain II 261 389 IPR036678 GO:0005524|GO:0006298|GO:0030983
Csa03g01702 1114 PANTHER DNA MISMATCH REPAIR PROTEIN MSH3 109 1076 - -
Csa03g01702 1114 Pfam MutS domain V 840 1034 IPR000432 GO:0005524|GO:0006298|GO:0030983
Csa03g01702 1114 MobiDBLite consensus disorder prediction 113 129 - -
Csa03g01702 1114 SMART DNAend 468 820 IPR007696 GO:0005524|GO:0006298|GO:0030983
Csa03g01702 1114 Gene3D - 450 785 - -
Csa03g01702 1114 Gene3D - 793 1072 IPR027417 -
Csa03g01702 1114 MobiDBLite consensus disorder prediction 67 98 - -
Csa03g01702 1114 Gene3D MutS, connector domain 259 447 IPR036678 GO:0005524|GO:0006298|GO:0030983
Csa03g01702 1114 Gene3D DNA repair protein MutS, domain I 125 254 IPR016151 GO:0005524|GO:0006298|GO:0030983
Csa03g01702 1114 Pfam MutS domain III 453 785 IPR007696 GO:0005524|GO:0006298|GO:0030983
Csa03g01702 1114 Gene3D - 635 761 - -
Csa03g01702 1114 PANTHER DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER 109 1076 IPR045076 GO:0005524|GO:0006298|GO:0030983|GO:0140664
Csa03g01702 1114 PIRSF Msh6 2 132 IPR017261 GO:0006298|GO:0030983
Csa03g01702 1114 PIRSF Msh6 128 1080 IPR017261 GO:0006298|GO:0030983
Csa03g01702 1114 MobiDBLite consensus disorder prediction 67 81 - -
Csa03g01702 1114 MobiDBLite consensus disorder prediction 1 53 - -
Csa03g01702 1114 MobiDBLite consensus disorder prediction 111 133 - -
Csa03g01702 1114 SMART mutATP5 837 1036 IPR000432 GO:0005524|GO:0006298|GO:0030983
Csa03g01702 1114 Pfam MutS domain II 285 430 IPR007860 GO:0005524|GO:0006298|GO:0030983
Csa03g01702 1114 SUPERFAMILY DNA repair protein MutS, domain III 453 791 IPR036187 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g01702 K08736 MSH3; DNA mismatch repair protein MSH3 - csv:101214720 2128.6
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g00459 Csa-Chr3:3856410 Csa03g01702 Csa-Chr3:12778406 1.71E-39 dispersed
Csa03g01702 Csa-Chr3:12778406 Csa07g01904 Csa-Chr7:18938382 1.23E-84 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g655 . . . . . . . . Cmo16g00135 . . . . . Sed08g0333 . . Bhi01g01330 Tan01g0263 Cmetu06g0071 . Hepe07g0166 Mch10g0163 . Cla01g00411 Cam01g0429 Cec01g0420 Cco01g0442 Clacu01g0430 Cmu01g0412 Cre09g2100 Cone1ag1153 Cone5ag0862 . . Lsi05g01236 . . Cme06g00988 . Blo09g00106 . . . . . . . . . Cma16g00130 . Car16g00115 . . . . . . . . . . Cla05g00871 Cam05g0960 Cec05g0964 Cco05g0964 Clacu05g0946 Cmu05g0903 Cre05g0987 . Csa03g01702 Chy06g00938 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007018 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 5 2 1 36