Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g01712 ATGGCGAACGCTGCTTCTGGAATGGCTGTAAGGGATGAATGCAAGCTGAAATTTTTGGAGTTAAAAACCAAGAGAAACTATCGGTTCATTATATTCAAGATTGAGAATCAAGAAGTTGTTGTGGAGAAACTCGGAAGCCCTGAAGAGACTTATGATGATTTCTCTGCCGCTATTCCTGCTAATGAGTGTCGCTATGCTGTCTTTGATTTTGATTTCACTACCGATGAGAACTGCCAGAAAAGCAAGATTTTCTTCATTGCATGGTCCCCTGACACATCAAAAGTGAGAAATAAGATGGTTTATGCAAGCTCCAAGGACAGATTCAAGAGGGAATTGGATGGAATTCAGGTGGAATTACAAGCCACAGATCCTAGCGAAATGAGCTTCGACATAATCAAGGCTCGAGCATTTTAA 414 41.06 MANAASGMAVRDECKLKFLELKTKRNYRFIIFKIENQEVVVEKLGSPEETYDDFSAAIPANECRYAVFDFDFTTDENCQKSKIFFIAWSPDTSKVRNKMVYASSKDRFKRELDGIQVELQATDPSEMSFDIIKARAF* 138
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 12823259 12825907 - CsaV3_3G017120.1 Csa03g01712 522617

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g01712 137 SMART adf_2 12 137 IPR002108 GO:0003779
Csa03g01712 137 PANTHER COFILIN/ACTIN-DEPOLYMERIZING FACTOR-LIKE PROTEIN 2 137 - -
Csa03g01712 137 Pfam Cofilin/tropomyosin-type actin-binding protein 14 134 IPR002108 GO:0003779
Csa03g01712 137 Gene3D Severin 1 136 IPR029006 -
Csa03g01712 137 PANTHER COFILIN-RELATED 2 137 IPR017904 GO:0015629|GO:0030042
Csa03g01712 137 CDD ADF_cofilin_like 6 136 IPR017904 GO:0015629|GO:0030042
Csa03g01712 137 SUPERFAMILY Actin depolymerizing proteins 3 135 - -
Csa03g01712 137 ProSiteProfiles ADF-H domain profile. 5 137 IPR002108 GO:0003779
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g01712 K05765 CFL; cofilin - csv:116402770 276.174
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g00900 Csa-Chr3:7470151 Csa03g01712 Csa-Chr3:12823259 2.90E-78 dispersed
Csa03g01712 Csa-Chr3:12823259 Csa05g00463 Csa-Chr5:3011075 2.78E-90 dispersed
Csa03g01712 Csa-Chr3:12823259 Csa04g01468 Csa-Chr4:14510152 6.14E-81 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g676 . . . . Bpe03g00111 . . Bma14g02084 . . Cma02g01068 Cma15g01098 Car02g00811 Car15g01009 . Cpe05g00651 . . . . . . . . Cla01g00433 Cam01g0456 Cec01g0445 Cco01g0467 Clacu01g0455 Cmu01g0434 Cre09g2078 . Cone5ag0867 . . Lsi05g01225 . . . . Blo09g00112 . . . . . . . Cmo02g01086 Cmo15g01156 Cma16g00125 . . Car18g01154 Cpe09g00090 Cpe13g00253 Bhi12g00511 . . . Hepe06g0702 . . Cla05g00883 Cam05g0971 Cec05g0975 Cco05g0975 Clacu05g0958 Cmu05g0915 Cre05g0999 Lsi09g00095 Csa03g01712 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000141 6 14 5 5 6 6 11 5 5 6 6 6 12 6 6 9 6 7 12 5 7 7 6 5 7 5 5 13 9 5 213