Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g01720 ATGAGTCCGACTGCCGTCGAAGCTCCATTACTTCTTCTTTTTCTTCTTGCCGCAGCGCTCCTGTGCCCGCTCGGAGGAGCCAGGCTTCTGGTGGAGATGACGGTGGTCCGAAACGCCTCTTCCATCGGAGCTCTTTGTTTGGACGGAAGCTTGCCAGCTTATCATCTGGACAGAGGATTCGGCGCCGGAGCGGGAAACTGGCTTCTACAGTTCGAGGGTGGTGGGTGGTGCAATGATGTAACATCTTGTTTTGAGAGAGCGAATAGTCGAAGAGGATCAACACATCTGATGACCAAATGGGAGGATTTTTCTGGTATTCTTAGCAACAATGCTTCCCTTAACCCAGACTTTTATAATTGGAACCGTGTGAAACTCAGGTACTGTGATGGAGCCTCATTTGCTGGAGATGCCTTGTTTGATAACGGGACATCAGTGCTTCATTTCAAAGGTCAAAAGATATGGGAATCCATCATTCTTGACCTTCTACCAAAAGGGTTGGGGACAGCAAGGAAGGCTCTGCTTTCTGGTTGCTCTGCTGGAGGTTTAGCAACTTTTCTGCATTGTGAAAATTTCACTAATTATTTGCCAAGAAATGCAAGTGTCAAATGCTTGAGTGATGCTGGATTTTTTCTTGACTTAAGAGACATAGGTTTAAATCACACCATGAGGAACTTTTATAAGGATCTTGTGGCTCTTCAGGGAATGGAGCGAAATCTGAATGAAAACTGCACAGCCTCCTCTTACTTTCCAGAATTGTGCATATTCCCTCAATATTCTTTGAAGTACATAACAACTCCATTTTTCATTCTCAATTCAGCATATGATGTTTTCCAATTTCATCATGGGTTGGTGCCACCATCTGCTGATTTACATGGACATTGGAACCATTGCAAATTAAATCCAGCAGACTGTAGTGAACTACAGATCCAGGTACTGCAAGAGGAGGAATGTTCATAA 957 44.31 MSPTAVEAPLLLLFLLAAALLCPLGGARLLVEMTVVRNASSIGALCLDGSLPAYHLDRGFGAGAGNWLLQFEGGGWCNDVTSCFERANSRRGSTHLMTKWEDFSGILSNNASLNPDFYNWNRVKLRYCDGASFAGDALFDNGTSVLHFKGQKIWESIILDLLPKGLGTARKALLSGCSAGGLATFLHCENFTNYLPRNASVKCLSDAGFFLDLRDIGLNHTMRNFYKDLVALQGMERNLNENCTASSYFPELCIFPQYSLKYITTPFFILNSAYDVFQFHHGLVPPSADLHGHWNHCKLNPADCSELQIQVLQEEECS* 319
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 12880358 12888911 - CsaV3_3G017200.1 Csa03g01720 522625
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g01720 318 Pfam Pectinacetylesterase 28 314 IPR004963 GO:0016787
Csa03g01720 318 PANTHER NOTUM-RELATED 27 314 IPR004963 GO:0016787
Csa03g01720 318 PANTHER PECTIN ACETYLESTERASE 9 27 314 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g01720 Csa-Chr3:12880358 Csa04g01491 Csa-Chr4:14648224 1.02E-104 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g01720 K19882 - csv:101216160 629.017