Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g01725 ATGGGCTCTGCCGTTGAGATTGGACTACCGTTCCAATTCGATGTTGAAGACACTATATTCGTTGCGGTGGGCACCGATGTTGACGATGCCAAAGCTACTCTCATTTGGGCTGTCCAGAACTTCGCCGGCAAGAGTTTCTGTCTGCTTCACGTTCATCACCTTCCTCCCAAAAATGAAGAGCCATCTTCCTATACACTAAAAGAACATGTAGCGCAGGCATTTGAGGAACTAGAAAGGCAAAAGCCTTTTGAACTTCTTAATCAATATGTTCTCATACTTGCCAAATTGGGGGTACAAGCCCAAAAAGTATGGATTGAGACGAACAACGTTGAGAGAGGGATTGTTGAAATTATTTCTCAGTACAGTATTAAATGGCTAGTCATGGGCTTAGACACGGAAGGATACAATATGAAGAGGTCCACCGGGTTGAAGTCCAAGAAAGCTTTCTATGTATCCCAGCAAGCACCAATATGTTGCCACATATGGTTTGTCTGCAGAGGGCGCCTTATATACTCAAGGGAGGCCAGAATGGGAAGATTAAAAAATTCGGAAATAGGAATCAACTATACCAACCATCTGAGACCAGAATCTGTAACTTGTAAGAACTTTGCAGATGCTCAAGAAAAGGAGTGTGCGGGTGATAGGATAAGCAGGTTTAGATATCAAGGTTTGGTGGATCAAAAACTTTCCAATAATGGAAACCTGGGCACTTCAAGGACAACGCTATTGTTAAAGAATGAGGGAGTAAAAGAGGGACATCCAGTTAGCCAGAGTGGTTTGCAAGAAGCCTCGATGAATGTTAAATCCATAAAAGACTTTGAGGGAGTGAAGGCTTGGGTAGAGAAAGATGCTGTGGGTGCTGAATTCAAGGCTGAATTATTAGAAAACTCGTGTATGGAGGAGGTGAAGAAAAGAAAAGAGATGGAAGAACTTCTAGAGAAAGAGAAAAGGGAAGTGGAACGGATAAACAAAGAGCGTGCTGAGCTTTTAAAAGAACTACAACATGTTGACGAGCAGAAATCGGTTCTTGATAGAAAAGCTTCGGAGTACCAGTGTGATATGGAGGAGCTGGAGAAGAAGATGTTTGCAGCTGTTGATCTTTTAGTAAGTTTCAAGGATAAGCGAGATAAATTGCTGATAGAGCGTGAAGGTGCAATGGACAAGCTTCGAAAGCTGAAGAATATTGTTAAAAGGGAACCTTCACGCTATCGCAATGCAGAAATGCCTATGTTCTCCTTCGTAGAAATAATTGAAGCAACGAGAAACTTTGATCCTTCCTGGAAGATTGGTGAGGGAAGACATGGCAGTGTTTATAAAGGCCTCCTTCGTCACATGGATGTTGCTCTAAAAATGTTTCCTTCGTATGGTTCTCATTCCCAATCAGCGTTTCAATATGAGGTTGAGGTCTTGAGTAGGGTTAGGCATCCCAACCTGGTTTCTATTATTGGAGCATGTCCAGAATCTAGGTTAATAGTGTATGAAAATTTAAAAAATGGCAGTTTGGAAGACCACCTTGCCTGCAAAAATCACAATTGCCCACTTCCATGGCAGACACGGATTCGCATTGCTGCTGATATCTGCTCAGCCCTTATATTTCTACATTACAGCGACCCTTGCATTGTCCACGGGGATATAAAACCAAGCAAAATCCTACTTGATACCAATTTTATTGCCAAACTAGGTGGTCTGGGCATCTCTCGTTTGATCCCACAAGAAGAGAAGGCCTTTAATTCGGCCTCAATGTGTAATATATCGAAAGAAAATAATCCATATATAGATCCTGAATGTCTTGAGACTGGAAAGTTCACTCCAGAATCAGACGTCTACTCCATTGGTGTTATTTTGCTGCGAATTTTAACTGGCAGAACACCTCCGGGTATTGTAGAAGATGTAAAATGTGCGATAGAAAATGACAACATTGTTGTCGTTTTAGACTCATCAGCTGGAGACTGGCCACATGATCTAGCAGAGCAATTAGCTCTTGTGGCATTGAGGTGCTGCAAGAAGGAAAAGTTGGAACGGCCTGACCTTGTCTCAGAATTATGGTGTGTTTTGGAGCCAATGAGATCCATTGCCTCAGCATCATGTTCGAGTTCGAAGAAACACCGAGTGCCTGCACATTTTACATGTCCGATTTTTCAGGAAATTATGAAAGATCCACTCATTGCTGCAGATGGATTCACATACGAAGCTGATGCAATAAGAGGATGGTTCAAAAGTGGCCACAACACTTCTCCAATGACAAATCTTAAACTTGAGCACTGTAATCTTGTACCAAATTATGCTCTTCTGAATGCAATTCAAGAGTGGCAGCATCAGCTATGA 2325 42.11 MGSAVEIGLPFQFDVEDTIFVAVGTDVDDAKATLIWAVQNFAGKSFCLLHVHHLPPKNEEPSSYTLKEHVAQAFEELERQKPFELLNQYVLILAKLGVQAQKVWIETNNVERGIVEIISQYSIKWLVMGLDTEGYNMKRSTGLKSKKAFYVSQQAPICCHIWFVCRGRLIYSREARMGRLKNSEIGINYTNHLRPESVTCKNFADAQEKECAGDRISRFRYQGLVDQKLSNNGNLGTSRTTLLLKNEGVKEGHPVSQSGLQEASMNVKSIKDFEGVKAWVEKDAVGAEFKAELLENSCMEEVKKRKEMEELLEKEKREVERINKERAELLKELQHVDEQKSVLDRKASEYQCDMEELEKKMFAAVDLLVSFKDKRDKLLIEREGAMDKLRKLKNIVKREPSRYRNAEMPMFSFVEIIEATRNFDPSWKIGEGRHGSVYKGLLRHMDVALKMFPSYGSHSQSAFQYEVEVLSRVRHPNLVSIIGACPESRLIVYENLKNGSLEDHLACKNHNCPLPWQTRIRIAADICSALIFLHYSDPCIVHGDIKPSKILLDTNFIAKLGGLGISRLIPQEEKAFNSASMCNISKENNPYIDPECLETGKFTPESDVYSIGVILLRILTGRTPPGIVEDVKCAIENDNIVVVLDSSAGDWPHDLAEQLALVALRCCKKEKLERPDLVSELWCVLEPMRSIASASCSSSKKHRVPAHFTCPIFQEIMKDPLIAADGFTYEADAIRGWFKSGHNTSPMTNLKLEHCNLVPNYALLNAIQEWQHQL* 775
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 12921325 12934331 + CsaV3_3G017250.1 Csa03g01725 522630

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g01725 774 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 701 773 IPR013083 -
Csa03g01725 774 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 32 13 772 - -
Csa03g01725 774 Pfam U-box domain 704 772 IPR003613 GO:0004842|GO:0016567
Csa03g01725 774 ProSitePatterns Protein kinases ATP-binding region signature. 429 450 IPR017441 GO:0005524
Csa03g01725 774 ProSiteProfiles Protein kinase domain profile. 423 689 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa03g01725 774 CDD STK_N 18 167 - -
Csa03g01725 774 PANTHER OS02G0152300 PROTEIN 13 772 - -
Csa03g01725 774 Pfam Protein tyrosine and serine/threonine kinase 428 677 IPR001245 GO:0004672|GO:0006468
Csa03g01725 774 Coils Coil 774 774 - -
Csa03g01725 774 CDD RING-Ubox_WDSUB1_like 708 749 - -
Csa03g01725 774 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 18 130 - -
Csa03g01725 774 SMART Ubox_2 707 770 IPR003613 GO:0004842|GO:0016567
Csa03g01725 774 Coils Coil 375 395 - -
Csa03g01725 774 SUPERFAMILY RING/U-box 698 773 - -
Csa03g01725 774 Gene3D Phosphorylase Kinase; domain 1 402 495 - -
Csa03g01725 774 ProSiteProfiles U-box domain profile. 703 774 IPR003613 GO:0004842|GO:0016567
Csa03g01725 774 SUPERFAMILY Protein kinase-like (PK-like) 400 677 IPR011009 -
Csa03g01725 774 Gene3D Transferase(Phosphotransferase) domain 1 496 700 - -
Csa03g01725 774 Gene3D HUPs 12 143 IPR014729 -
Csa03g01725 774 Coils Coil 291 360 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g01725 - - - csv:101211339 1530.38
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g01725 Csa-Chr3:12921325 Csa06g00058 Csa-Chr6:375570 1.54E-171 dispersed
Csa03g01725 Csa-Chr3:12921325 Csa03g00887 Csa-Chr3:7385538 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g716 . . . . . . . . . Cmo18g01279 . . . . . . Cpe14g00102 Bhi01g01293 . . . . . . Cla01g00450 . . . . . . . . . . Lsi05g01216 . Chy09g01031 Cme06g01014 . . . . . . . . . . . . Cma18g01253 Car16g00105 Car18g01163 Cpe09g00082 Cpe13g00095 . . . . . . . . . . . . . . . Csa03g01725 . Cme09g01573
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001162 3 11 1 3 3 1 4 0 0 2 1 1 3 2 1 2 1 4 4 1 2 2 2 2 2 1 2 5 3 2 71
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77993 PF07714 PK_Tyr_Ser-Thr 2.00E-35 CL0016 Csa PK