Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g01727 ATGCCTTCATGGTGGGGGAAGTCGTCCAAAGACGTGAAGAAGAAAACAAGTAAAGAAAGTTTCATCGACTCATTACACCGAAAGTTTAAGAATTCACCTGAAGGTAAAGTAAACAGCAGATCAGGAAGTTCTCGTAAACGTGGTGGTGACACTGTATCTGAGAAGGGGTCCAAATCACCAATATCAAGATCACCATCACCTTCCAAAGAAGTAGCTAGATGTCAAAGTTTTGCTGAAAGAACGCATTCTCACAAACTTCCACTTCCAGATTTGCGACCTGTAGGTGTAGGTCGCACAGATTCTGGGATTAGTGTGGCAGCAAAATCCAAATTAGAGAGAAGCTCCAAGACATCCTCATTCCTACCCCTTCCTAGACCTGCTTGTATTCGAAGTAGGCCAGATCCTGCAGATTTGGATGGAGACTTGGTCACTGGTTCAGTCTTTGGTGAGTCCTCAAGTGATAGTGATGATCCCAATGATTCACGTCAACGTAGTCCTCCAGCAACTGACTATGACATTGGGGCTAGAACTGTGATAGGTTCTACTGAACCTAGTGAAACTCTCAAAGATCAATCTCCTACTGTCGTGCAAAAAAATTTAAAAGAAGGCAAGAAAGCGGAAAGTCTTCCATTTCCTCATAAGAATTCTTCAATACCTAAACGGAGGCCTTTAAGCAGCAACGTAACAAATCTACAAGTTCCTCGTCATGGGGCCTTCTTTAGCGCACCAGATAGTTCTATGTCTAGTCCCTCTAGAAGTCCTATGAGGATATTTAGTACTGAGCAAGTCATGAACGCCGCTGTTTGGGCTGGAAAATCTCACCCAGATGTCATTTTAGGTGGATCTGGCCATTGTTCTAGCCCGGGTTCTGGTCACAATTCAGGGCACAACTCTATGGGAGGTGATATGGCGGGCCACTTTTTTTGGCAACAAAGTAGGGGTAGCCCTGAATATTCTCCTGTACCTAGTTCCAGAATGACTAGCCCTGGTCCTAGTTCCAGAATTCAAAGCGGTGCTGTCACACCTATTCATCCTAGAGCAGGAGCTCCACCTGCTGAGTCACAAACATGCTGGCCTGATGAGAAACAAACTCATCGTTTGCCTCTTCCTCCCATAGCAATCTCAATCTGTTCTCCATTTTCACATTCGAATTCGGCAGTGACATCTCCTTCAGTGCCTAGAAGTCCAGGAAGGACAGAGACTCCAGCAAGCCCAGGTCCACGCTGGAAAAAGGGGAAGCTACTGGGTCGGGGCACATTTGGGCATGTATATGTCGGTTTTAATAGCGAAAGTGGAGAGATGTGTGCAATGAAGGAGGTCACATTATTTTCTGATGATGCGAAGTCTAGGGAAAGTGCTAAGCAATTAATGCAGGAAATTGCTTTACTGAGTCGTTTGAGGCATCCCAACATCGTGCAGTATTATGGTTCCGAAACAGTGGGTGATAAATTCTATATATATTTGGAATATGTATCTGGTGGTTCCATTTATAAATTACTTCAAGAGTATGGACAATTTGGGGAGCTAGCAATCCGTAGCTATACTCAACAAATACTATCAGGACTTGCATATTTGCATGCTAAAGCTACAGTGCACAGGGATATTAAAGGAGCAAACATACTTGTTGACCCGAACGGTCGTGTTAAACTGGCAGACTTTGGGATGGCGAAGCATATCACAGGTCAATCATGTCCACTATCGTTTAAGGGTAGCCCTTACTGGATGGCACCTGAGGTAATAAAGAACTCAAATGGTTGCAACCTTGCCGTTGATGTTTGGAGTCTTGGATGTACTGTTCTGGAGATGGCTACTACAAAGCCACCATGGAGCCAGTACGAAGGGGTTGCCGCGATGTTTAAGATTGGTAACAGCAAGGAACTCCCTGTAATTCCAGAGCACCTCTCAGATGATGGGAAGGATTTTGTTAGACTATGTCTGCAACGAAACCCACATCATCGACCTACAGCTGCTCAACTCTTGGAGCATCCTTTTGTCAAACATGCTGCACCTGTAGAGAGGCCTATTTTGATCTCTGAACCTTCTGATACAACTCCTGGAGTTACAAACGGAGTGAAGATTTTGGGTATTGGTCAATCACGGACTACTTCTATGGACTCGGATGGTAGACTTGCAGTTCATTCTTCAAGAGTCTCAAAAGCTGTTCTTCATGCCAGTGAAATCAATATTTCCAGAAACATATCATGTCCTGTTTCGCCAATCGGAAGCCCTCTTTTGCATTCACGATCTCCTCAACACCCTAGTGGAAGAATGTCTCCTTCACCCATTTCAAGTCCACGAACCATGTCGGGATCATCCACACCTTTGACAGGATGTGGTGGTGCAATTCCTTACAACCACCTGAAACAAACTATATACTTGCAAGAAGGATTTGTAAGCATGCCAAAATCCTTAAATAGCAGTCCATACAGCAGCGGTATCTCCTTCCATGATTCAAATCCCGATATTTTCCGAGGGTTGCAGCCTGGGGCTCACATCTTCTCTGAAATGATACCAGAAAACGAAGTCTTGGGAAAGCAGATCGGACGGCCTGCTTACAGTGAGGTGTATGATGGCCAACACATTTTGGCCGACCGAGTGTCTCGGCAGCTCCTGAGGGATCATGTGAAAGCAAATCCTTCTCTTGATTTGAGTCCTAGCGCTACATTGTCGGGTCGCATGAATGGTATTTGA 2691 44.96 MPSWWGKSSKDVKKKTSKESFIDSLHRKFKNSPEGKVNSRSGSSRKRGGDTVSEKGSKSPISRSPSPSKEVARCQSFAERTHSHKLPLPDLRPVGVGRTDSGISVAAKSKLERSSKTSSFLPLPRPACIRSRPDPADLDGDLVTGSVFGESSSDSDDPNDSRQRSPPATDYDIGARTVIGSTEPSETLKDQSPTVVQKNLKEGKKAESLPFPHKNSSIPKRRPLSSNVTNLQVPRHGAFFSAPDSSMSSPSRSPMRIFSTEQVMNAAVWAGKSHPDVILGGSGHCSSPGSGHNSGHNSMGGDMAGHFFWQQSRGSPEYSPVPSSRMTSPGPSSRIQSGAVTPIHPRAGAPPAESQTCWPDEKQTHRLPLPPIAISICSPFSHSNSAVTSPSVPRSPGRTETPASPGPRWKKGKLLGRGTFGHVYVGFNSESGEMCAMKEVTLFSDDAKSRESAKQLMQEIALLSRLRHPNIVQYYGSETVGDKFYIYLEYVSGGSIYKLLQEYGQFGELAIRSYTQQILSGLAYLHAKATVHRDIKGANILVDPNGRVKLADFGMAKHITGQSCPLSFKGSPYWMAPEVIKNSNGCNLAVDVWSLGCTVLEMATTKPPWSQYEGVAAMFKIGNSKELPVIPEHLSDDGKDFVRLCLQRNPHHRPTAAQLLEHPFVKHAAPVERPILISEPSDTTPGVTNGVKILGIGQSRTTSMDSDGRLAVHSSRVSKAVLHASEINISRNISCPVSPIGSPLLHSRSPQHPSGRMSPSPISSPRTMSGSSTPLTGCGGAIPYNHLKQTIYLQEGFVSMPKSLNSSPYSSGISFHDSNPDIFRGLQPGAHIFSEMIPENEVLGKQIGRPAYSEVYDGQHILADRVSRQLLRDHVKANPSLDLSPSATLSGRMNGI* 897
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 12943196 12950937 - CsaV3_3G017270.1 Csa03g01727 522632
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g01727 896 MobiDBLite consensus disorder prediction 744 775 - -
Csa03g01727 896 ProSitePatterns Protein kinases ATP-binding region signature. 415 438 IPR017441 GO:0005524
Csa03g01727 896 MobiDBLite consensus disorder prediction 55 71 - -
Csa03g01727 896 MobiDBLite consensus disorder prediction 385 411 - -
Csa03g01727 896 MobiDBLite consensus disorder prediction 742 775 - -
Csa03g01727 896 Pfam Protein kinase domain 410 665 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa03g01727 896 SMART serkin_6 409 665 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa03g01727 896 Gene3D Transferase(Phosphotransferase) domain 1 408 683 - -
Csa03g01727 896 MobiDBLite consensus disorder prediction 312 338 - -
Csa03g01727 896 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 1 813 - -
Csa03g01727 896 MobiDBLite consensus disorder prediction 1 224 - -
Csa03g01727 896 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE YODA 1 813 - -
Csa03g01727 896 ProSiteProfiles Protein kinase domain profile. 409 665 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa03g01727 896 SUPERFAMILY Protein kinase-like (PK-like) 407 747 IPR011009 -
Csa03g01727 896 CDD STKc_MEKK1_plant 408 665 - -
Csa03g01727 896 MobiDBLite consensus disorder prediction 8 53 - -
Csa03g01727 896 MobiDBLite consensus disorder prediction 180 198 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa03g01727 Csa05g00475 CCT
Csa03g01727 Csa05g00475 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g01727 Csa-Chr3:12943196 Csa05g00475 Csa-Chr5:3086912 0 dispersed
Csa06g02469 Csa-Chr6:21952631 Csa03g01727 Csa-Chr3:12943196 9.21E-35 dispersed
Csa03g01727 Csa-Chr3:12943196 Csa06g02922 Csa-Chr6:25325579 7.02E-113 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77994 PF00069 Pkinase 7.40E-71 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g01727 K20717 - csv:101214961 1707.19