Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g01735 ATGGCCTCTCGCTACGAATTGGAACTCAAAATTCAGTCCGCTAAAGATCTCAAGAACATCAACTGGAAGTACGGCACTCTCAAGCCCTACGCCGTCGTTTGGATCGATCCCAAGCAAAAATCGTCTACAAAGGTCGACAATCAAGGCGATACATCGCCCTTTTGGGATGAAACGCTCGTCATTCCCTTCTTCTCATCGATCGAGGATTCCACGCTCCATATCGACGTCGTTCATGTCGTCGGCGCTGATGAAGACACCAAGCCGTTGATTGGCTCCGCTCGACTTCCCCTTGCGGAGCTCATCGACGATGTTGGACTTGGCGAAAGCTCTCAACGAACTCTCCAATTGAAACGGCCCTCCGGTAGGCCGCAAGGGAAAATCGAAGTTAAAGTAACTGTCCGAGAACCACGTTACCGATCATCCGATTCTTATTACACCCCGCCGTATGGAGTCCCACCGCCAGGTAGCGCTAGGGATTACTCTGCTCCGCCGCCTCCTTATGTCGCTCCGTACTCTGCTCCTCCCAATCCTTACTATTCGGCGGCTCCGCCGTCCGGATACCCCTACGGGGGGTATGGCGCACCGGCGCCACCACCAACAGCGCCTCCATACGGCCAATCGAATTACGGGCAGCCATCGTACGGTCAGGGAAGTTATGGACAGCCAGCGTATGGCGAACATACGTACTATGGGCAGCCGGAGGAGAAGAAGAAAAGCAAGTTCGGGATGGGGACGGGGCTAGCGGTGGGCGCGGCTGCTGGAATTTTAGGTGGATTGGCCATCGGAGAGGGCGTCGAGTATGTGGAGGACCAGATCGCCGAGGACGCAGCGCAGAAGGTTGAGGATGACCTTGGCTACGGCGACGAAGATTTTTAG 876 55.48 MASRYELELKIQSAKDLKNINWKYGTLKPYAVVWIDPKQKSSTKVDNQGDTSPFWDETLVIPFFSSIEDSTLHIDVVHVVGADEDTKPLIGSARLPLAELIDDVGLGESSQRTLQLKRPSGRPQGKIEVKVTVREPRYRSSDSYYTPPYGVPPPGSARDYSAPPPPYVAPYSAPPNPYYSAAPPSGYPYGGYGAPAPPPTAPPYGQSNYGQPSYGQGSYGQPAYGEHTYYGQPEEKKKSKFGMGTGLAVGAAAGILGGLAIGEGVEYVEDQIAEDAAQKVEDDLGYGDEDF* 292
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 13005979 13006854 - CsaV3_3G017350.1 Csa03g01735 522640

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g01735 291 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 3 134 IPR035892 -
Csa03g01735 291 CDD C2_SRC2_like 6 129 IPR044750 GO:0006952
Csa03g01735 291 Pfam C2 domain 6 101 IPR000008 -
Csa03g01735 291 Gene3D C2 domain 2 144 IPR035892 -
Csa03g01735 291 SMART C2_3c 6 109 IPR000008 -
Csa03g01735 291 PANTHER INGRESSION PROTEIN FIC1 1 287 - -
Csa03g01735 291 MobiDBLite consensus disorder prediction 108 158 - -
Csa03g01735 291 ProSiteProfiles C2 domain profile. 1 110 IPR000008 -
Csa03g01735 291 PANTHER PROTEIN SRC2-LIKE 1 287 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g01735 - - - csv:101213996 454.136
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g00829 Csa-Chr3:7071015 Csa03g01735 Csa-Chr3:13005979 3.00E-10 dispersed
Csa03g01735 Csa-Chr3:13005979 Csa03g01455 Csa-Chr3:10856093 1.24E-08 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g733 . . . . . . . . . Cmo18g01288 . . . . Sed07g1008 . Cpe14g00093 Bhi01g01270 Tan01g0217 Cmetu06g1400 . Hepe07g0137 . . . . . . . . . . . . . Lsi05g01208 . . Cme06g01023 . . . . . . . . . . . Cma16g00109 Cma18g01261 Car16g00097 Car18g01170 Cpe09g00076 . . . . . . . . Cla05g00900 Cam05g0984 Cec05g0989 Cco05g0987 Clacu05g0972 Cmu05g0929 Cre05g1014 . Csa03g01735 Chy06g00966 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009669 2 1 1 1 0 1 2 1 1 1 1 1 1 1 1 2 1 2 2 1 1 1 1 1 1 1 0 2 1 0 33