Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g01740 ATGGCCATCTTCACATCCCTCTTTCTTCCTTTTCTTTTTCTCTTCCTTCCTTTTCTTTCCTCTGATTTTGTTCCCTCTGACATTTACCTTCTCAGCTGCGGCTCATCTTCCAATTCCTCTTTCTTTAATCGCATCTTCGTCGCCGATTCATTGAAACCCGCCTCCGACTTTCTCGCCGCCGGTAAATCGGTGGCGCTTTCCGATCGAAACCCACCTCCGGATTCTCCTTCTTTGTATCATACAGCCAGAGTTTTCACCAGGGTCTCAAGCTACAAGTTCAACATCAAGAAGAACGGTACTCACTTCCTGCGGTTTCATCTTTCGCCATTTTCGTCGCCGGCTTTCGCTTTACATTCTGCAAATTTCACTATTTCGGCTAATGGGGTTTTTCTTTCTACTATTTCTCACGTTAACGATTCTGTAATTAAAGAGTTTATGGTGAGAATTGACACCAACGTGCTTGAAATCGAGTTCCAACCAGCTTCGAGTTCGAGTTTTGGATTCGCGAATGCAATCGAGGTATTTTCAGCTCCTAAAGAACTCATTACCGATAATGGAGCTAAGCTTGTGGATTCTGATGGAGGTCGAGAATATTACAAGCTCACATCGCAGATTTTGGAAACCAAATACAGAATTAACGTTGGGGGTCCCAAATTGACTCCATTCAACGACACTTTATGGAGAACTTGGGTGCCCGATGAGCCTTATCTGGCTTTAAAGTCGGCGGCAAAGCTCGCTTCAACTTTTCACACTCCGAACTATGAGCCCGGCGGCCCCACCAGGGAGGTCGCGCCGGACATCGTTTATATGACGGCGCAGCAGATGAACAAGGACTACTCAATTTCGGGTGCAAAATTTAACCTCACCTGGAACTTTCCATTGGACTCTAATGGCGTGAATCACTTGGTTCGCTTGCATTTCTGCGATTTTGTTAGTTCCGCTCTTAATCAATTATATTTCAATGTGTATATCAATGGCTATCCCGCATATAGGGACTTGGATTTGTCATCTTTGTCCCTTCAGCTTTCAACTCCCTTTTATATTGATTTCATTGTGGATTCTGGTAGTTCTGGGGATGTTCAAATTAGTGTTGGACCGTCTGATCTGAGCAGTTCTTTGAGATATAATGCGATCTTAAATGGAGCAGAGATCATGGAAATGGTGAACTCTAAGGTTTTGTTTACAGAAATTGAGAAAAGGAAAAGAAATTTGTGGGTTATTGTAGGTCCTGTTGTTGGTGGATTTATTGGTTTGTGTTTGATCGTTGCTGCAATTGTTGCTTTCGGATGCAAGAGGAGGAAGAAACGGAAGCCGAAGCGGGCAGAGAGCGCAGGCTGGACTTCAGTTCAAGCGTATGGAGGAGGCAGTTCTGATAGTAAATTATCAAGAGGATCAACTCTTGCATCTTTTGGGCCAAATGGATACCACAGCTTGAAGATCCCCTTCAGTGAAATTCAGTCAGCAACAAACAATTTTGACAAGAGTTTGATAATTGGTTCGGGCGGATTTGGGATGGTTTACAAAGGGGTTCTTCGGGACAATATAAAGGTTGCTGTGAAGAGAGGTGTGCCGGGATCACGGCAGGGCCTTCCTGAATTCCACACAGAGATTGCTATCTTGTCGAAGATTCGACATCACCATCTTGTTTCGCTTGTTGGATACTGTGAAGAACAGTCAGAAATGATACTGGTTTACGAATATATGGAGAAAGGTCCGTTGAAAAAGCAGTTGTATGGCTCGGTTGTGTCACCATTGTCGTGGAAACAAAGGCTCGAAATCTGCATTGGTGCAGCTAGAGGTCTACACTACCTCCACACTGGTTTTGCACAGGGAATCATCCACCGTGATATCAAGTCGACCAACATTTTGCTGGATGAGAATTATGTTGCTAAAGTTGCTGATTTTGGTCTTTCGAGATCAGGGCCTCGTCTTGACGAGACACATGTTAGTACTGGAGTAAAAGGCAGCTTCGGGTATCTAGATCCAGAGTACTTTCGAAGACAACAACTCACTGACAAGTCAGACGTGTATTCATTTGGAGTAGTACTCTTTGAAGTTCTTTGTGCTAGGCCTGCAGTTGATCCATTGCTTGCTAGGGAACAAGTAAATCTCGCCGAGTGGGCTCTGCATTGGCAACGAAAAGGGATGCTTGAAAAGATTGTGGATCCACATTTGGTCGGGCAAATTAATCCGAATTCATTAAAGAAATATGGAGAAACAGCAGAAAAATGTTTGGCTGACTATGGTATTGACAGGCCAACAATGGGGGATGTCTTATGGAATTTGGAATACGTTCTTCAACTACAAATCGGGCCATCAAATGAACCATCAGAACCTGTGGACATCGACGACTCCGACTTTCCAACATCCACAGCTATTCATCCAAGCAACATGAGGAGACATTCAGAAGAAGGTACTGATAATTTTTCAGACATAAGTACAACCAAAGTTTTCTCTCAGTTGCTTACTAATGATGGAAGATAG 2484 43.72 MAIFTSLFLPFLFLFLPFLSSDFVPSDIYLLSCGSSSNSSFFNRIFVADSLKPASDFLAAGKSVALSDRNPPPDSPSLYHTARVFTRVSSYKFNIKKNGTHFLRFHLSPFSSPAFALHSANFTISANGVFLSTISHVNDSVIKEFMVRIDTNVLEIEFQPASSSSFGFANAIEVFSAPKELITDNGAKLVDSDGGREYYKLTSQILETKYRINVGGPKLTPFNDTLWRTWVPDEPYLALKSAAKLASTFHTPNYEPGGPTREVAPDIVYMTAQQMNKDYSISGAKFNLTWNFPLDSNGVNHLVRLHFCDFVSSALNQLYFNVYINGYPAYRDLDLSSLSLQLSTPFYIDFIVDSGSSGDVQISVGPSDLSSSLRYNAILNGAEIMEMVNSKVLFTEIEKRKRNLWVIVGPVVGGFIGLCLIVAAIVAFGCKRRKKRKPKRAESAGWTSVQAYGGGSSDSKLSRGSTLASFGPNGYHSLKIPFSEIQSATNNFDKSLIIGSGGFGMVYKGVLRDNIKVAVKRGVPGSRQGLPEFHTEIAILSKIRHHHLVSLVGYCEEQSEMILVYEYMEKGPLKKQLYGSVVSPLSWKQRLEICIGAARGLHYLHTGFAQGIIHRDIKSTNILLDENYVAKVADFGLSRSGPRLDETHVSTGVKGSFGYLDPEYFRRQQLTDKSDVYSFGVVLFEVLCARPAVDPLLAREQVNLAEWALHWQRKGMLEKIVDPHLVGQINPNSLKKYGETAEKCLADYGIDRPTMGDVLWNLEYVLQLQIGPSNEPSEPVDIDDSDFPTSTAIHPSNMRRHSEEGTDNFSDISTTKVFSQLLTNDGR* 828
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 13045860 13049345 + CsaV3_3G017400.1 Csa03g01740 522645

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g01740 827 Pfam Malectin-like domain 31 386 IPR024788 -
Csa03g01740 827 CDD STKc_IRAK 498 763 - -
Csa03g01740 827 PANTHER MALECTIN/RECEPTOR-LIKE KINASE FAMILY PROTEIN 16 779 - -
Csa03g01740 827 Gene3D Transferase(Phosphotransferase) domain 1 568 775 - -
Csa03g01740 827 SUPERFAMILY Protein kinase-like (PK-like) 470 762 IPR011009 -
Csa03g01740 827 Gene3D - 206 389 - -
Csa03g01740 827 Gene3D - 27 178 - -
Csa03g01740 827 Gene3D Phosphorylase Kinase; domain 1 458 567 - -
Csa03g01740 827 PANTHER OS07G0166700 PROTEIN 16 779 IPR045272 GO:0004714|GO:0006468
Csa03g01740 827 Pfam Protein tyrosine and serine/threonine kinase 497 689 IPR001245 GO:0004672|GO:0006468
Csa03g01740 827 ProSiteProfiles Protein kinase domain profile. 492 765 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa03g01740 827 MobiDBLite consensus disorder prediction 773 812 - -
Csa03g01740 827 ProSitePatterns Serine/Threonine protein kinases active-site signature. 612 624 IPR008271 GO:0004672|GO:0006468
Csa03g01740 827 SMART serkin_6 492 765 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa03g01740 827 ProSitePatterns Protein kinases ATP-binding region signature. 498 520 IPR017441 GO:0005524
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g01740 - - - csv:101211413 1591.25
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g01740 Csa-Chr3:13045860 Csa05g02152 Csa-Chr5:24585101 0 dispersed
Csa06g00082 Csa-Chr6:530193 Csa03g01740 Csa-Chr3:13045860 2.75E-83 dispersed
Csa03g01740 Csa-Chr3:13045860 Csa06g01709 Csa-Chr6:15028080 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g749 . . . Bda07g01898 Bpe03g00149 . . Bma14g02048 Cmo16g00112 Cmo18g01293 . . . . . . Cpe14g00089 . . . . . . . . . . . . . . . . . . Lsi05g01200 . . . . Blo09g00068 . . . . . . . . . Cma16g00104 Cma18g01264 Car16g00093 Car18g01174 Cpe09g00072 . . . . . . . . Cla05g00907 . . . . . . . Csa03g01740 Chy06g00971 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009011 1 0 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 0 0 1 0 1 0 1 29
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77995 PF12819 Malectin_like 2.50E-31 CL0202 Csa PK