Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g01742 ATGACTGACGTGATACTGCATATATACGACGTTACGAATAGCGGATCAGATAAGACCAACAATACAATTGTTAATATCAACAAGATCTTCAAGGATGGAATTGGTCTAGGCGGTATCTTCCATAGCGCTGTTCAGGTTTATGGAGATGATGAATGGTCCTTTGGGTTTTGCGAGCAAGGAACTGGAGTTTTCAGTTGCCCCTCTGGACAGAATCCAATGTACACATATCGTGAAAGTATTAACCTTGGGAGAACAAACTGTTCAATTTTCAAGGTTAACCAGATTTTAAGAGAGCTTAGTAGAGAGTGGCCTGGAAGTTCTTATGACTTACTATCAAGGAACTGTAACCACTTTTGTGATCAGTTCTGTGAGATGCTCAATGTATCAAAGCTTCCAGGTTGGGTTAATCGGTTTGCCAATGCTGGTGATGCTGCATTGGAAGTAGCTGGAAACACAGCAGTTCGTTTCAAACAAGCAAAGACAGAGATCATATCGGCCAGCAAAGTTGCATACCGTTTTCTTCTAGGGGCAACAAACAATGTCATGTCTTCTCCAGAGTCTACTAGTAATTCAAATAGAGGTACTCCTAGATTTCAAGCCGCATGGTTTAAGAATCTCATCACTACTGGTGCGAAACCATCGAGTAGTTCAGAATTAGGAAATCAAGTTGAAGGCACACAGCAGCAACAACAACAATGCAAAGCAAATGAAGATACACCAATGTTGCTCAATTCGCGATCACAACATGATATGTGA 756 41.14 MTDVILHIYDVTNSGSDKTNNTIVNINKIFKDGIGLGGIFHSAVQVYGDDEWSFGFCEQGTGVFSCPSGQNPMYTYRESINLGRTNCSIFKVNQILRELSREWPGSSYDLLSRNCNHFCDQFCEMLNVSKLPGWVNRFANAGDAALEVAGNTAVRFKQAKTEIISASKVAYRFLLGATNNVMSSPESTSNSNRGTPRFQAAWFKNLITTGAKPSSSSELGNQVEGTQQQQQQCKANEDTPMLLNSRSQHDM* 252
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 13051849 13054695 + CsaV3_3G017420.1 Csa03g01742 522647

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g01742 251 ProSiteProfiles PPPDE domain profile. 2 150 IPR008580 GO:0008233
Csa03g01742 251 SMART DUF862_2a 2 157 IPR008580 GO:0008233
Csa03g01742 251 Pfam PPPDE putative peptidase domain 3 145 IPR008580 GO:0008233
Csa03g01742 251 PANTHER DESUMOYLATING ISOPEPTIDASE 1 238 IPR008580 GO:0008233
Csa03g01742 251 MobiDBLite consensus disorder prediction 211 251 - -
Csa03g01742 251 PANTHER EXPRESSED PROTEIN 1 238 - -
Csa03g01742 251 Gene3D PPPDE domains 1 168 IPR042266 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g01742 - - - csv:101212629 488.419
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g01742 Csa-Chr3:13051849 Csa04g02650 Csa-Chr4:25854422 2.34E-24 dispersed
Csa03g01742 Csa-Chr3:13051849 Csa02g02420 Csa-Chr2:21343720 6.76E-25 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g751 . . . Bda07g01899 Bpe03g00150 . Bma10g01245 Bma14g02047 Cmo16g00110 Cmo18g01295 . . . . . . . . . . . . . . . . . . . . . Cone1ag1188 Cone5ag0888 . . Lsi05g01199 . . . Blo07g00378 Blo09g00067 . . . . . . . . . Cma16g00103 Cma18g01266 Car16g00092 Car18g01175 Cpe09g00071 . . . . . . . . Cla05g00908 Cam05g0994 Cec05g0997 Cco05g0995 Clacu05g0982 Cmu05g0938 Cre05g1022 . Csa03g01742 Chy06g00972 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005875 1 0 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 4 1 1 39