Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g01748 ATGGCGGACGTGCAGATGGCTGATGCTGAGACCTTCGCCTTTCAGGCTGAGATTAACCAGCTTCTCAGTTTGATTATCAATACTTTCTACAGCAACAAGGAGATTTTCCTTCGAGAGCTTATCAGCAATTCCTCTGACGCATTGGACAAGATTCGATATGAGAGTTTGACAGACAAGAGCAAACTCGACGGACAACCAGAGCTCTTCATCAGAATTGTTCCGGACAAGGTTAACAAAACTCTCTCCATCATCGACAGTGGAGTCGGAATGACTAAAGCAGATTTGGTGAATAATTTGGGAACCATCGCAAGGTCGGGTACCAAAGAATTCATGGAGGCATTGCAGGCCGGTGCCGATGTGAGCATGATTGGTCAATTTGGTGTAGGGTTCTATTCGGCTTACCTTGTGGCCGAGAAGGTGATTGTTACCACGAAGCATAACGATGATGAACAATACATATGGGAATCACAGGCCGGTGGTTCTTTCACCGTCACAAGGGATGTAAATGGAGAGCAACTCGGGAGGGGTACCAAGATCACTCTCTTCCTTAAGGAGGATCAGTTGGAGTATCTGGAAGAGAGGAGAATTAAGGATCTTGTGAAGAAGCACTCTGAATTCATTAGCTATCCTATCTACCTCTGGGTTGAGAAAACAATCGAGAAGGAGATTAGCGACGATGAGGACGATGAACCTAAAAAGGAAGAAGAAGGAAACGTTGAAGATGTGGACGAGGAAAAGGAAACCAAGTCAAAGAAGAAGAAGATCAAAGAGGTTTCTCACGAATGGGAACTCATCAACAAGCAGAAACCCATTTGGCTGCGCAAGCCTGAAGAAATTACCAAAGAAGAATATGCATCATTCTACAAGAGCTTGACAAACGATTGGGAGGAGCACCTTGCAGTGAAACACTTCTCTGTTGAGGGACAGCTTGAGTTCAAAGCAATTCTCTTTGTCCCAAAGAGAGCTCCATTTGATCTTTTCGACAACCGTAAGAAAATGAACAACATAAAGCTGTATGTGAGAAGAGTGTTCATTATGGACAACTGTGAGGAGCTGATCCCCGAGTATCTTGGATTTGTTAAAGGCGTAGTTGATTCCGATGATTTGCCGCTCAATATCTCACGTGAGATGTTGCAGCAGAACAAGATTTTGAAGGTGATAAGGAAGAATTTAGTGAAGAAGTGCATAGAGATGTTCAATGAGATAGCAGAGAACAAGGAGGATTACAACAAGTTCTATGAAGCTTTCTCTAAGAACTTGAAGTTGGGTATCCACGAAGATAGCCAAAACAGAGCTAAATTGGCTGACTTGCTTCGATTCTACTCGACCAAAAGTGGAGATGAAATGACAAGCTTGAAGGATTATGTCACCAGGATGAAGGAAGGTCAGAAAGATATTTACTACATCACTGGTGAGAGCAAAAAGGCAGTTGAGAATTCTCCGTTCTTGGAGCGCTTGAAGAAGAAAGGCTATGAGGTGCTTTTCATGGTCGACGCCATTGATGAATATGCTGTTGGGCAACTGAAAGAGTACGACGGCAAGAAGCTAGTCTCTGCAACCAAGGAAGGACTCAAGCTTGATGATGAAACCGAAGAAGAGAAGAAGAAAAAGGAGGAAAAGAAGAAGTCTTTTGAGAACCTATGCAAGACCATCAAGGACATCCTTGGCGACAAAGTAGAGAAGGTCGTCGTTTCCGACAGAATTGTGGACTCTCCTTGCTGCTTGGTCACTGGCGAATATGGTTGGACTGCGAACATGGAGAGGATCATGAAGGCTCAAGCTCTAAGGGATAACAGCATGGGCGCTTACATGTCAAGCAAGAAGACGATGGAGATCAATCCAGACAATGGAATCATGGAGGAGTTAAGAAAAAGAGCCGAAGCAGACAAAAACGACAAATCCGTCAAGGATTTAGTTATGCTTCTCTTTGAAACTGCTCTGTTGACATCTGGTTTCAGCCTTGATGATCCTAACACATTTGCTGCAAGAATCCACAGAATGTTGAAACTTGGTCTTAGCATTGATGAGGAAGAAAATGAAGGAGATGACGCAGACATGCCTGCTTTAGAGGAAGATGCTACTGAAGAGAGCAAAATGGAGGAGGTAGACTAA 2112 43.75 MADVQMADAETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRYESLTDKSKLDGQPELFIRIVPDKVNKTLSIIDSGVGMTKADLVNNLGTIARSGTKEFMEALQAGADVSMIGQFGVGFYSAYLVAEKVIVTTKHNDDEQYIWESQAGGSFTVTRDVNGEQLGRGTKITLFLKEDQLEYLEERRIKDLVKKHSEFISYPIYLWVEKTIEKEISDDEDDEPKKEEEGNVEDVDEEKETKSKKKKIKEVSHEWELINKQKPIWLRKPEEITKEEYASFYKSLTNDWEEHLAVKHFSVEGQLEFKAILFVPKRAPFDLFDNRKKMNNIKLYVRRVFIMDNCEELIPEYLGFVKGVVDSDDLPLNISREMLQQNKILKVIRKNLVKKCIEMFNEIAENKEDYNKFYEAFSKNLKLGIHEDSQNRAKLADLLRFYSTKSGDEMTSLKDYVTRMKEGQKDIYYITGESKKAVENSPFLERLKKKGYEVLFMVDAIDEYAVGQLKEYDGKKLVSATKEGLKLDDETEEEKKKKEEKKKSFENLCKTIKDILGDKVEKVVVSDRIVDSPCCLVTGEYGWTANMERIMKAQALRDNSMGAYMSSKKTMEINPDNGIMEELRKRAEADKNDKSVKDLVMLLFETALLTSGFSLDDPNTFAARIHRMLKLGLSIDEEENEGDDADMPALEEDATEESKMEEVD* 704
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 13094503 13098153 + CsaV3_3G017480.1 Csa03g01748 522653

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g01748 703 MobiDBLite consensus disorder prediction 224 242 - -
Csa03g01748 703 MobiDBLite consensus disorder prediction 675 703 - -
Csa03g01748 703 CDD HATPase_Hsp90-like 19 207 - -
Csa03g01748 703 Gene3D - 522 673 IPR037196 -
Csa03g01748 703 Gene3D - 435 521 - -
Csa03g01748 703 SUPERFAMILY Ribosomal protein S5 domain 2-like 267 522 IPR020568 -
Csa03g01748 703 PIRSF HSP90_HTPG 1 703 IPR001404 GO:0005524|GO:0006457|GO:0016887|GO:0051082|GO:0140662
Csa03g01748 703 Pfam Hsp90 protein 189 698 IPR001404 GO:0005524|GO:0006457|GO:0016887|GO:0051082|GO:0140662
Csa03g01748 703 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 32 186 IPR003594 -
Csa03g01748 703 Gene3D - 266 434 - -
Csa03g01748 703 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 10 217 IPR036890 -
Csa03g01748 703 Coils Coil 232 252 - -
Csa03g01748 703 Hamap Chaperone protein HtpG [htpG]. 7 669 IPR001404 GO:0005524|GO:0006457|GO:0016887|GO:0051082|GO:0140662
Csa03g01748 703 ProSitePatterns Heat shock hsp90 proteins family signature. 30 39 IPR019805 GO:0005524|GO:0006457|GO:0051082
Csa03g01748 703 SMART HKATPase_4 32 187 IPR003594 -
Csa03g01748 703 MobiDBLite consensus disorder prediction 224 250 - -
Csa03g01748 703 PRINTS 90kDa heat shock protein signature 10 30 IPR020575 -
Csa03g01748 703 PRINTS 90kDa heat shock protein signature 31 53 IPR020575 -
Csa03g01748 703 PRINTS 90kDa heat shock protein signature 80 97 IPR020575 -
Csa03g01748 703 PRINTS 90kDa heat shock protein signature 98 115 IPR020575 -
Csa03g01748 703 PRINTS 90kDa heat shock protein signature 123 145 IPR020575 -
Csa03g01748 703 PRINTS 90kDa heat shock protein signature 175 192 IPR020575 -
Csa03g01748 703 PRINTS 90kDa heat shock protein signature 193 211 IPR020575 -
Csa03g01748 703 MobiDBLite consensus disorder prediction 676 703 - -
Csa03g01748 703 PANTHER HEAT SHOCK PROTEIN 90-1 1 702 - -
Csa03g01748 703 Coils Coil 527 547 - -
Csa03g01748 703 PANTHER HEAT SHOCK PROTEIN 90 FAMILY MEMBER 1 702 IPR001404 GO:0005524|GO:0006457|GO:0016887|GO:0051082|GO:0140662
Csa03g01748 703 Gene3D - 7 233 IPR036890 -
Csa03g01748 703 SUPERFAMILY HSP90 C-terminal domain 546 668 IPR037196 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g01748 K04079 HSP90A, htpG; molecular chaperone HtpG - csv:101210914 1286.55
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g02753 Csa-Chr1:24375480 Csa03g01748 Csa-Chr3:13094503 0 dispersed
Csa01g02755 Csa-Chr1:24388218 Csa03g01748 Csa-Chr3:13094503 0 dispersed
Csa02g02144 Csa-Chr2:19398943 Csa03g01748 Csa-Chr3:13094503 0 dispersed
Csa03g01748 Csa-Chr3:13094503 Csa06g00948 Csa-Chr6:7636800 0 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g762 Blo06g01136 Blo15g00109 . . . . . . Cmo16g00105 . . . . . . . Cpe14g00083 . . . . . . . . . . . . . . Cone1ag1191 Cone5ag0892 . . Lsi05g01193 . . . . . . Bda15g00711 . Bpe12g00442 Bma08g00293 . . . . Cma16g00098 . Car16g00088 . . . . . . . . . . . . . . . . . . Csa03g01748 Chy06g00977 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000587 3 3 3 2 4 2 5 5 4 3 3 3 4 4 3 4 3 7 3 3 3 4 5 0 4 3 1 4 4 3 102