Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g01752 ATGTCGCTCAGCTTGGTTGATCTCGAGGTTCTTGTCAAATCTGGCAGGCCCGACGACCGGAAAAATGCTGCTAAAATTCTGCCCATAGTAAAGAACCAGCATTTGCTTCTTTGCACACTCCTCATAAGCAATGCTATGGCAATGGAGGCCCTGCCTATCTTCATTGATGCACTTCTACCAGCTTGGGGTGCAATTGTGATATCAGTCACTCTCATACTAACTTTTGGAGAGATTATTCCTCAAGCTATATGTTCGAGGTATGGGCTGAGTGTTGGCGCTAAGCTGTCCGTCGTTGTTCGGGTGCTTGTCTTAGTCCTCTTTCCTTTGTCTTACCCCATCAGTAAGTTATTAGATTGGCTTCTGGGGAAGGGGCATTTTGCACTTCTAAGAAGGGCAGAGCTCAAGACATTTGTGGATATGCATGGGAATAAGGCAGGGAAAGGTGGAGAATTGACTCAAGAAGAAACTACCATTATCACTGGAGCTTTGGACATGACACTCAAAACTGCCAAAGATGCTATGACTCCATTAGCCAAATTGTTCTCACTTGATATAAATTCCAAACTTGATGAGAAAACCATGGAGCTGATTTTAAGAAAAGGACATAGTCGAGTGCCAATATACTCTGGATATCCAACTAATATCATTGGTATTATTTTGGTTAAAAATCTGATCAAATTTCATCCAGAGGATGAAACTCCCATCAGAAATCTCACCATCAGAAAAGTTCCAAGGGTACGTGAGAACTTACCTTTGTATGACATTTTGAACGAGTTCCAACAAGGACATAGTCATATGGCTGTTGTCATAAAGAGTCATAATGAAGCCAAAAGGCCTGCAGATTCTAACAAACCAGAACTCGAAACCGCGACACCAGTAACTGAGATGGAGTTAGGACATATTAAGTTGCAAATAGGGAATATTTGCTCTAATGGAGATACTGATACCGATGGAAAATCAATGCCAGATTTTGATGAAAATGTTATTGGTATCATAACATTGGAGGATGTCATGGAAGAACTTTTACAGGAAGAGATATTGGATGAGACTGATGAATATGTTGCTGTCCACAACAAGCTGAAAGTGAATATGGAAGTAAGGAGATCAACATCGGAATCACCAGGAGGACCTCGTCTGCAATGGATGTCACCAGTGGCATCCCCATTATCTTCATACCATCATTCTCCACTTTCTTCTTCATACAATCACTCACCAATACTTCATTCTCCAATTCCTCCACATATTCACTCCCCATTTAATCCACCATCCCTCTCTTCTTCCCCAAGAAACTACTTTCATTCTTCTCCAACTCCATGCTCTGTTCCTTCTCTTTCTGCTTCACCTTCTCATAAGATTTCAAGGAAATCATATGAGAAGCTGAAGAAGCCAAATGGATCATAG 1401 41.33 MSLSLVDLEVLVKSGRPDDRKNAAKILPIVKNQHLLLCTLLISNAMAMEALPIFIDALLPAWGAIVISVTLILTFGEIIPQAICSRYGLSVGAKLSVVVRVLVLVLFPLSYPISKLLDWLLGKGHFALLRRAELKTFVDMHGNKAGKGGELTQEETTIITGALDMTLKTAKDAMTPLAKLFSLDINSKLDEKTMELILRKGHSRVPIYSGYPTNIIGIILVKNLIKFHPEDETPIRNLTIRKVPRVRENLPLYDILNEFQQGHSHMAVVIKSHNEAKRPADSNKPELETATPVTEMELGHIKLQIGNICSNGDTDTDGKSMPDFDENVIGIITLEDVMEELLQEEILDETDEYVAVHNKLKVNMEVRRSTSESPGGPRLQWMSPVASPLSSYHHSPLSSSYNHSPILHSPIPPHIHSPFNPPSLSSSPRNYFHSSPTPCSVPSLSASPSHKISRKSYEKLKKPNGS* 467
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 13117461 13125388 - CsaV3_3G017520.1 Csa03g01752 522657

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g01752 466 MobiDBLite consensus disorder prediction 420 451 - -
Csa03g01752 466 CDD CBS_pair_CorC_HlyC_assoc 169 339 IPR044751 -
Csa03g01752 466 MobiDBLite consensus disorder prediction 412 466 - -
Csa03g01752 466 ProSiteProfiles CBS domain profile. 174 235 IPR000644 -
Csa03g01752 466 PANTHER ANCIENT CONSERVED DOMAIN PROTEIN-RELATED 1 459 IPR045095 GO:0010960
Csa03g01752 466 Gene3D - 153 349 IPR046342 -
Csa03g01752 466 ProSiteProfiles CNNM transmembrane domain profile. 1 155 IPR002550 -
Csa03g01752 466 MobiDBLite consensus disorder prediction 452 466 - -
Csa03g01752 466 PANTHER DOMAIN-CONTAINING PROTEIN, PUTATIVE, EXPRESSED-RELATED 1 459 - -
Csa03g01752 466 SUPERFAMILY CBS-domain pair 159 343 IPR046342 -
Csa03g01752 466 Pfam Cyclin M transmembrane N-terminal domain 1 151 IPR002550 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g01752 K16302 CNNM; metal transporter CNNM - csv:101210102 830.476
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g01752 Csa-Chr3:13117461 Csa03g04207 Csa-Chr3:36879382 2.57E-159 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g773 . . . . Bpe03g00157 . . . Cmo16g00103 . . . . . Sed13g0543 . Cpe14g00080 Bhi01g01589 Tan01g0786 . . . Mch10g0553 . . . . . . . . Cone1ag1195 . . Cone15ag0060 Lsi05g01188 . . . . Blo09g00058 . . . . . . . . . Cma16g00096 . Car16g00086 . . . . . . . . . . Cla05g00919 Cam05g1007 Cec05g1011 Cco05g1007 Clacu05g0995 Cmu05g0950 Cre05g1031 . Csa03g01752 Chy06g00981 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007021 1 9 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 37