Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g01781 ATGGATATTATGATGGATGGTCGTGGGGGTTATGGTGGTGGGTCACCTGATGAACAAGAAGCTTCTAATGATCGTAAGGGGAAAAAGACCTACCATCGTCATAATCCTTACCAGATTCAGCAGCTTGAATCATTTTTCAGGCAATGCCCACACCCTGATGAAAATCAGCGGCGCCAGCTGAGTCGAGAGCTTGGTCTTGAGACCAAACAGATCAAATTTTGGTTTCAAAACAAGAGGACTCAAACTAAGGCTCAGAATGAGCGAGCAGACAACTCTTCGCTTCGGACAGAGAATGAAAAGATTCAATGTGAAAACCTTGCAATTAGAGAAGCGTTGAGGAACGTGATCTGTCCATCCTGTGGAGGTCCACCTTTTGGAGAAGAAGAGCGACAGCGCAATCTCCAAAAATTACGTCTTGAAAATTCTCACTTAAAAGAAGAGCATGAAAAAGTGTCTAACCTTCTTGCCAAGTACATTGGAAAACCAATTTCACAACTTGAATCACTATTGCCTGTTCTTGGATCTTCACTTGATTTGTCACCAAGAAGTTCCCTTACTCAAATAGTTCCAAGCCCTGCAGTCGATCTTATTTCTGATCCAGTAATATTAGATGGAGCAGCAACACCTTACCAATCAAGAGGTATTAATGATTTGGAAAATGCTCTTATGTTGGAAACTGCTGCAACTGGCTTGGAAGAGTTAATCAGACTTTTGAGGATCGACGAGCCTTTGTGGATGAAGAGCCTGAATGATGGGAGGTATGTTCTCCATCGTGACAGCTACGAAAAGATATTTCCTCGACCCAATCACTTCAAAACATCTAGTGCTCGTACTGAATCATCAAAAGCTTTGGGAGTGGTGACAATGAGTGCAATTCAATTGGTTGATTTTTTTTTAGATGCGGATAAATGGGCAGACCTTTTTCCAACCATCATTACAAATGCAGAGACATTTCATATTATTGACCCTGGGATGCCTGGAAACCGCAGTGGTGCTTTGCAGTTGATGTATCAACAAATGCACATCTTTTCACCCCTCGTGTCTCCTCGAGACTTTTGCTTCCTTCGACATTGTCAGCAGATTGAGTTTGGTGTCTGGGTCATAGTGGATGTTTCGTATGAAATCTTAAAGGATTGTGTCACCTCTGCACGATGCTGGAGGCTTCCTTCCGGGTGCTTGATTCAAGAAATGCCCAATGGTTGCTCTAAGGTTACCTGGGTTGAGCATGTGGAAGTGGATGATAAAACACAAACCCACCGGCTGTATCGAGATCTTGTATTCAATACTTTGGCATATGGAGCCGACCGATGGCTTTTCACTCTTCAAAGGATGTGTGAGAGATTGGCTTATACTTTCAGGGATTGTGCACCTAACCATGAACTTGGAGGAGTGTTAACTTCTCCTGAAGGGAGGAGGAGCATCATGAAGCTGTCACATAGAATGGTAAAAAATTTCTGTGGAATACTGAGCATGTCAGGTAAAATAGATTTCCCTCAGTTATCCGAAGTGAACAATAGTGGTGTTCGAATATCTGTTCGGATTAGCTCGGAACTGGGGCAGCCCAGTGGGACAGTCGTAAGTGCGGCGACATCTCTTTGGCTTCCTCTACAACCTGAAACCATCTTTAATTTCTTCAGGGATGAAAAGGCCAGAGTTCAGGTTTGTAATACCACACATTTCCTTTTTCTTGATCGGTTGTTATTCCCCTGA 1710 43.22 MDIMMDGRGGYGGGSPDEQEASNDRKGKKTYHRHNPYQIQQLESFFRQCPHPDENQRRQLSRELGLETKQIKFWFQNKRTQTKAQNERADNSSLRTENEKIQCENLAIREALRNVICPSCGGPPFGEEERQRNLQKLRLENSHLKEEHEKVSNLLAKYIGKPISQLESLLPVLGSSLDLSPRSSLTQIVPSPAVDLISDPVILDGAATPYQSRGINDLENALMLETAATGLEELIRLLRIDEPLWMKSLNDGRYVLHRDSYEKIFPRPNHFKTSSARTESSKALGVVTMSAIQLVDFFLDADKWADLFPTIITNAETFHIIDPGMPGNRSGALQLMYQQMHIFSPLVSPRDFCFLRHCQQIEFGVWVIVDVSYEILKDCVTSARCWRLPSGCLIQEMPNGCSKVTWVEHVEVDDKTQTHRLYRDLVFNTLAYGADRWLFTLQRMCERLAYTFRDCAPNHELGGVLTSPEGRRSIMKLSHRMVKNFCGILSMSGKIDFPQLSEVNNSGVRISVRISSELGQPSGTVVSAATSLWLPLQPETIFNFFRDEKARVQVCNTTHFLFLDRLLFP* 570
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 13390651 13395686 - CsaV3_3G017810.1 Csa03g01781 522686
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g01781 569 Gene3D - 227 426 IPR023393 -
Csa03g01781 569 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 17 553 IPR042160 -
Csa03g01781 569 Coils Coil 84 104 - -
Csa03g01781 569 SUPERFAMILY Bet v1-like 219 449 - -
Csa03g01781 569 CDD START_ArGLABRA2_like 221 446 - -
Csa03g01781 569 Pfam Homeodomain 28 83 IPR001356 GO:0003677
Csa03g01781 569 SMART START_1 225 447 IPR002913 GO:0008289
Csa03g01781 569 Coils Coil 127 154 - -
Csa03g01781 569 ProSitePatterns 'Homeobox' domain signature. 60 83 IPR017970 GO:0000981|GO:0006355
Csa03g01781 569 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HDG12-RELATED 17 553 - -
Csa03g01781 569 MobiDBLite consensus disorder prediction 1 31 - -
Csa03g01781 569 CDD homeodomain 28 86 IPR001356 GO:0003677
Csa03g01781 569 Gene3D - 15 102 - -
Csa03g01781 569 ProSiteProfiles START domain profile. 216 450 IPR002913 GO:0008289
Csa03g01781 569 ProSiteProfiles 'Homeobox' domain profile. 25 85 IPR001356 GO:0003677
Csa03g01781 569 SUPERFAMILY Homeodomain-like 14 86 IPR009057 -
Csa03g01781 569 SMART HOX_1 27 89 IPR001356 GO:0003677
Csa03g01781 569 Pfam START domain 230 447 IPR002913 GO:0008289
Csa03g01781 569 SUPERFAMILY Bet v1-like 468 553 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00502 Csa-Chr1:3341774 Csa03g01781 Csa-Chr3:13390651 0 dispersed
Csa03g01781 Csa-Chr3:13390651 Csa07g00370 Csa-Chr7:2759169 3.14E-150 dispersed
Csa03g01781 Csa-Chr3:13390651 Csa06g00579 Csa-Chr6:4976972 4.11E-153 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31231 PF01852 START 8.20E-36 CL0209 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g01781 K09338 - csv:101205899 1108.98