Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa03g01797 | ATGCCCTTAGAAGGTATTTTTATTGAACCTTCTTCAACCTCACTTCCTGATCTCTCTCTTCAAATCAGCCCTCCAAATGTTTCTTCTTCTTCTTCATCGTCTTCTTCGTCGTCCTCTTCTTCATATTCTTCAATTAGAACCCTTAGCCATGGATTTTCAGAAACAAGTTTTGATCTTTTGATTCAAAGAAACTCACAATTCCAAAATAATTTCTCAAATGACTCTCGTACTCAAACCGAGCTCTCTTTAGGAACCAACAACAACAACAACAACAGCTTGTTCGGTGGAGCAACACTACATCCACCGCCAACGCTCCCGCATCTTCGAGGGCTTTCGATGTTCGACGTATCATCGGACGGTTTACGACCGATCAAAGGGATTCCGGTGTATCACAACCGTCCATTTCCATTTTTGGGTGTAGATCAAAAAGATCACCATTATTTTCACCAATTTCCATCAGCTTGCTTCTTCCCAAATTACTCAAATACGAACGGGAACAACGGCGGAGGAGGAGTGAATCAAATGGGTTATCATCATCGAGGAGGCGGAGGAGTTGGAGGGAATAATAATAATTGTTCAGCGAGGTTCAACAATGGGGTTGTTTGTGTAGAAGCAATTAATAAATGTTTGAATAATAATAGTAATAGTAATAGTAATAATGCAGCTTCTTGTTGTTGTTCTTCTTCTTCTTCTGATGTTTGTTCTTCTCATGGGATGATGATGATGAGATCCAGATTTTTGCAGAAGCTTCCTCCAAAACGAAGCATGAGAGCTCCTAGAATGAGATGGACTACCTCCTTACATGCTCGCTTTGTTCATGCTGTCGAACATCTCGGTGGCCATGAAAGAGCAACACCTAAGTCAGTTCTTGAGCTGATGGATGTTAAGGATCTAACACTAGCTCATGTCAAAAGCCATTTACAGATGTATCGAACTGTTAAGACTACTGACAAACCTGCAGCTTCCTCAGGCCAATCGGATGGTTCGGGAGAGGATGATGTATCTCCTACGATAATGGGCACGACCAGAGGAGATCATGGTGGCTCTAAGCAATTTTCCGATCAAAGAGCTCCACCTGACCGGTCCGGCCAGTCGCCTCCAGATGTGGAATTTGGCTGCTCCACACTTTGGTCTAATTCTTCAAGAGATGTTTGGCCACAAACAAACTCTAATGAAATGGATAATAATGTCAATACACCAACTTTGTCAACACAACAGAAAACCATGCACCAAATTCAGGTGCAATGA | 1248 | 42.23 | MPLEGIFIEPSSTSLPDLSLQISPPNVSSSSSSSSSSSSSSYSSIRTLSHGFSETSFDLLIQRNSQFQNNFSNDSRTQTELSLGTNNNNNNSLFGGATLHPPPTLPHLRGLSMFDVSSDGLRPIKGIPVYHNRPFPFLGVDQKDHHYFHQFPSACFFPNYSNTNGNNGGGGVNQMGYHHRGGGGVGGNNNNCSARFNNGVVCVEAINKCLNNNSNSNSNNAASCCCSSSSSDVCSSHGMMMMRSRFLQKLPPKRSMRAPRMRWTTSLHARFVHAVEHLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKTTDKPAASSGQSDGSGEDDVSPTIMGTTRGDHGGSKQFSDQRAPPDRSGQSPPDVEFGCSTLWSNSSRDVWPQTNSNEMDNNVNTPTLSTQQKTMHQIQVQ* | 416 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 13675525 | 13682209 | + | CsaV3_3G017970.1 | Csa03g01797 | 522702 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa03g01797 | 415 | MobiDBLite | consensus disorder prediction | 368 | 415 | - | - | |
Csa03g01797 | 415 | MobiDBLite | consensus disorder prediction | 1 | 40 | - | - | |
Csa03g01797 | 415 | Pfam | Myb-like DNA-binding domain | 260 | 311 | IPR001005 | - | |
Csa03g01797 | 415 | MobiDBLite | consensus disorder prediction | 315 | 348 | - | - | |
Csa03g01797 | 415 | SUPERFAMILY | Homeodomain-like | 256 | 312 | IPR009057 | - | |
Csa03g01797 | 415 | TIGRFAM | myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class | 259 | 312 | IPR006447 | GO:0003677 | |
Csa03g01797 | 415 | MobiDBLite | consensus disorder prediction | 12 | 40 | - | - | |
Csa03g01797 | 415 | PANTHER | TRANSCRIPTION REPRESSOR KAN1 | 1 | 413 | - | - | |
Csa03g01797 | 415 | PANTHER | TRANSCRIPTION FACTOR KAN2-RELATED | 1 | 413 | IPR044847 | GO:0000976|GO:0006355|GO:0010158 | |
Csa03g01797 | 415 | MobiDBLite | consensus disorder prediction | 315 | 415 | - | - | |
Csa03g01797 | 415 | Gene3D | - | 258 | 315 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa01g00737 | Csa-Chr1:4660574 | Csa03g01797 | Csa-Chr3:13675525 | 2.60E-38 | dispersed | |
Csa03g00139 | Csa-Chr3:1078308 | Csa03g01797 | Csa-Chr3:13675525 | 1.37E-42 | dispersed | |
Csa03g01797 | Csa-Chr3:13675525 | Csa05g01612 | Csa-Chr5:19070170 | 5.33E-41 | dispersed | |
Csa03g01797 | Csa-Chr3:13675525 | Csa03g04582 | Csa-Chr3:39874462 | 1.90E-53 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
31232 | PF00249 | Myb_DNA-binding | 1.90E-05 | CL0123 | Csa | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa03g01797 | - | - | csv:101204946 | 709.909 |