Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g01797 ATGCCCTTAGAAGGTATTTTTATTGAACCTTCTTCAACCTCACTTCCTGATCTCTCTCTTCAAATCAGCCCTCCAAATGTTTCTTCTTCTTCTTCATCGTCTTCTTCGTCGTCCTCTTCTTCATATTCTTCAATTAGAACCCTTAGCCATGGATTTTCAGAAACAAGTTTTGATCTTTTGATTCAAAGAAACTCACAATTCCAAAATAATTTCTCAAATGACTCTCGTACTCAAACCGAGCTCTCTTTAGGAACCAACAACAACAACAACAACAGCTTGTTCGGTGGAGCAACACTACATCCACCGCCAACGCTCCCGCATCTTCGAGGGCTTTCGATGTTCGACGTATCATCGGACGGTTTACGACCGATCAAAGGGATTCCGGTGTATCACAACCGTCCATTTCCATTTTTGGGTGTAGATCAAAAAGATCACCATTATTTTCACCAATTTCCATCAGCTTGCTTCTTCCCAAATTACTCAAATACGAACGGGAACAACGGCGGAGGAGGAGTGAATCAAATGGGTTATCATCATCGAGGAGGCGGAGGAGTTGGAGGGAATAATAATAATTGTTCAGCGAGGTTCAACAATGGGGTTGTTTGTGTAGAAGCAATTAATAAATGTTTGAATAATAATAGTAATAGTAATAGTAATAATGCAGCTTCTTGTTGTTGTTCTTCTTCTTCTTCTGATGTTTGTTCTTCTCATGGGATGATGATGATGAGATCCAGATTTTTGCAGAAGCTTCCTCCAAAACGAAGCATGAGAGCTCCTAGAATGAGATGGACTACCTCCTTACATGCTCGCTTTGTTCATGCTGTCGAACATCTCGGTGGCCATGAAAGAGCAACACCTAAGTCAGTTCTTGAGCTGATGGATGTTAAGGATCTAACACTAGCTCATGTCAAAAGCCATTTACAGATGTATCGAACTGTTAAGACTACTGACAAACCTGCAGCTTCCTCAGGCCAATCGGATGGTTCGGGAGAGGATGATGTATCTCCTACGATAATGGGCACGACCAGAGGAGATCATGGTGGCTCTAAGCAATTTTCCGATCAAAGAGCTCCACCTGACCGGTCCGGCCAGTCGCCTCCAGATGTGGAATTTGGCTGCTCCACACTTTGGTCTAATTCTTCAAGAGATGTTTGGCCACAAACAAACTCTAATGAAATGGATAATAATGTCAATACACCAACTTTGTCAACACAACAGAAAACCATGCACCAAATTCAGGTGCAATGA 1248 42.23 MPLEGIFIEPSSTSLPDLSLQISPPNVSSSSSSSSSSSSSSYSSIRTLSHGFSETSFDLLIQRNSQFQNNFSNDSRTQTELSLGTNNNNNNSLFGGATLHPPPTLPHLRGLSMFDVSSDGLRPIKGIPVYHNRPFPFLGVDQKDHHYFHQFPSACFFPNYSNTNGNNGGGGVNQMGYHHRGGGGVGGNNNNCSARFNNGVVCVEAINKCLNNNSNSNSNNAASCCCSSSSSDVCSSHGMMMMRSRFLQKLPPKRSMRAPRMRWTTSLHARFVHAVEHLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKTTDKPAASSGQSDGSGEDDVSPTIMGTTRGDHGGSKQFSDQRAPPDRSGQSPPDVEFGCSTLWSNSSRDVWPQTNSNEMDNNVNTPTLSTQQKTMHQIQVQ* 416
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 13675525 13682209 + CsaV3_3G017970.1 Csa03g01797 522702

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g01797 415 MobiDBLite consensus disorder prediction 368 415 - -
Csa03g01797 415 MobiDBLite consensus disorder prediction 1 40 - -
Csa03g01797 415 Pfam Myb-like DNA-binding domain 260 311 IPR001005 -
Csa03g01797 415 MobiDBLite consensus disorder prediction 315 348 - -
Csa03g01797 415 SUPERFAMILY Homeodomain-like 256 312 IPR009057 -
Csa03g01797 415 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 259 312 IPR006447 GO:0003677
Csa03g01797 415 MobiDBLite consensus disorder prediction 12 40 - -
Csa03g01797 415 PANTHER TRANSCRIPTION REPRESSOR KAN1 1 413 - -
Csa03g01797 415 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 1 413 IPR044847 GO:0000976|GO:0006355|GO:0010158
Csa03g01797 415 MobiDBLite consensus disorder prediction 315 415 - -
Csa03g01797 415 Gene3D - 258 315 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g01797 - - - csv:101204946 709.909
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00737 Csa-Chr1:4660574 Csa03g01797 Csa-Chr3:13675525 2.60E-38 dispersed
Csa03g00139 Csa-Chr3:1078308 Csa03g01797 Csa-Chr3:13675525 1.37E-42 dispersed
Csa03g01797 Csa-Chr3:13675525 Csa05g01612 Csa-Chr5:19070170 5.33E-41 dispersed
Csa03g01797 Csa-Chr3:13675525 Csa03g04582 Csa-Chr3:39874462 1.90E-53 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Csa03g01095 . 12 262 G2-like Transcription Factor Family AT3G24120 60.5 1.6e-71 266.5
Csa06g03417 . 31 195 G2-like Transcription Factor Family AT3G24120 59.2 2.1e-44 176.4
Csa06g01145 CCT 22 195 G2-like Transcription Factor Family AT3G24120 57.4 3.1e-43 172.6
Csa07g01218 CCT 16 166 G2-like Transcription Factor Family AT3G24120 58.9 1.2e-39 160.6
Csa03g02731 . 4 152 G2-like Transcription Factor Family AT3G24120 53.7 7.8e-39 157.9
Csa03g01797 . 241 399 G2-like Transcription Factor Family AT5G16560 61.5 3.9e-41 166.0
Csa03g04154 CCT 1 161 G2-like Transcription Factor Family AT5G42630 59.0 1.9e-37 152.9
Csa06g00332 . 20 258 G2-like Transcription Factor Family AT1G25550 54.8 3.7e-51 198.7
Csa05g02583 . 19 258 G2-like Transcription Factor Family AT1G25550 52.0 3.5e-49 192.2
Csa04g01908 . 1 302 G2-like Transcription Factor Family AT5G05090 56.2 6.6e-74 274.2
Csa03g03685 . 1 287 G2-like Transcription Factor Family AT5G05090 54.7 1.5e-70 263.1
Csa03g01095 . 12 298 G2-like Transcription Factor Family AT4G13640 51.7 6.5e-54 208.0
Csa03g01095 . 12 262 G2-like Transcription Factor Family AT3G24120 60.5 1.6e-71 266.5
Csa06g03417 . 31 195 G2-like Transcription Factor Family AT3G24120 59.2 2.1e-44 176.4
Csa06g01145 CCT 22 195 G2-like Transcription Factor Family AT3G24120 57.4 3.1e-43 172.6
Csa07g01218 CCT 16 166 G2-like Transcription Factor Family AT3G24120 58.9 1.2e-39 160.6
Csa03g02731 . 4 152 G2-like Transcription Factor Family AT3G24120 53.7 7.8e-39 157.9
Csa02g00846 . 3 252 G2-like Transcription Factor Family AT1G69580 50.9 2.0e-51 199.9
Csa07g01218 CCT 1 382 G2-like Transcription Factor Family AT1G79430 54.2 3.2e-87 318.9
Csa06g01145 CCT 1 364 G2-like Transcription Factor Family AT1G79430 51.5 1.5e-76 283.5
Csa03g01095 . 39 198 G2-like Transcription Factor Family AT1G79430 63.0 3.2e-39 159.5
Csa06g03415 . 54 262 G2-like Transcription Factor Family AT2G01060 64.3 8.3e-52 200.7
Csa04g01908 . 1 302 G2-like Transcription Factor Family AT3G10760 62.2 2.9e-90 328.9
Csa03g03685 . 1 287 G2-like Transcription Factor Family AT3G10760 59.1 8.9e-84 307.4
Csa04g01908 . 1 203 G2-like Transcription Factor Family AT2G40970 60.2 1.3e-60 229.9
Csa03g03685 . 1 199 G2-like Transcription Factor Family AT2G40970 60.0 1.3e-58 223.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006004 2 1 2 2 1 1 2 1 1 1 1 1 2 1 1 2 0 2 2 1 1 1 1 1 1 1 1 2 2 1 39
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31232 PF00249 Myb_DNA-binding 1.90E-05 CL0123 Csa TF