Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g01797 ATGCCCTTAGAAGGTATTTTTATTGAACCTTCTTCAACCTCACTTCCTGATCTCTCTCTTCAAATCAGCCCTCCAAATGTTTCTTCTTCTTCTTCATCGTCTTCTTCGTCGTCCTCTTCTTCATATTCTTCAATTAGAACCCTTAGCCATGGATTTTCAGAAACAAGTTTTGATCTTTTGATTCAAAGAAACTCACAATTCCAAAATAATTTCTCAAATGACTCTCGTACTCAAACCGAGCTCTCTTTAGGAACCAACAACAACAACAACAACAGCTTGTTCGGTGGAGCAACACTACATCCACCGCCAACGCTCCCGCATCTTCGAGGGCTTTCGATGTTCGACGTATCATCGGACGGTTTACGACCGATCAAAGGGATTCCGGTGTATCACAACCGTCCATTTCCATTTTTGGGTGTAGATCAAAAAGATCACCATTATTTTCACCAATTTCCATCAGCTTGCTTCTTCCCAAATTACTCAAATACGAACGGGAACAACGGCGGAGGAGGAGTGAATCAAATGGGTTATCATCATCGAGGAGGCGGAGGAGTTGGAGGGAATAATAATAATTGTTCAGCGAGGTTCAACAATGGGGTTGTTTGTGTAGAAGCAATTAATAAATGTTTGAATAATAATAGTAATAGTAATAGTAATAATGCAGCTTCTTGTTGTTGTTCTTCTTCTTCTTCTGATGTTTGTTCTTCTCATGGGATGATGATGATGAGATCCAGATTTTTGCAGAAGCTTCCTCCAAAACGAAGCATGAGAGCTCCTAGAATGAGATGGACTACCTCCTTACATGCTCGCTTTGTTCATGCTGTCGAACATCTCGGTGGCCATGAAAGAGCAACACCTAAGTCAGTTCTTGAGCTGATGGATGTTAAGGATCTAACACTAGCTCATGTCAAAAGCCATTTACAGATGTATCGAACTGTTAAGACTACTGACAAACCTGCAGCTTCCTCAGGCCAATCGGATGGTTCGGGAGAGGATGATGTATCTCCTACGATAATGGGCACGACCAGAGGAGATCATGGTGGCTCTAAGCAATTTTCCGATCAAAGAGCTCCACCTGACCGGTCCGGCCAGTCGCCTCCAGATGTGGAATTTGGCTGCTCCACACTTTGGTCTAATTCTTCAAGAGATGTTTGGCCACAAACAAACTCTAATGAAATGGATAATAATGTCAATACACCAACTTTGTCAACACAACAGAAAACCATGCACCAAATTCAGGTGCAATGA 1248 42.23 MPLEGIFIEPSSTSLPDLSLQISPPNVSSSSSSSSSSSSSSYSSIRTLSHGFSETSFDLLIQRNSQFQNNFSNDSRTQTELSLGTNNNNNNSLFGGATLHPPPTLPHLRGLSMFDVSSDGLRPIKGIPVYHNRPFPFLGVDQKDHHYFHQFPSACFFPNYSNTNGNNGGGGVNQMGYHHRGGGGVGGNNNNCSARFNNGVVCVEAINKCLNNNSNSNSNNAASCCCSSSSSDVCSSHGMMMMRSRFLQKLPPKRSMRAPRMRWTTSLHARFVHAVEHLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKTTDKPAASSGQSDGSGEDDVSPTIMGTTRGDHGGSKQFSDQRAPPDRSGQSPPDVEFGCSTLWSNSSRDVWPQTNSNEMDNNVNTPTLSTQQKTMHQIQVQ* 416
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 13675525 13682209 + CsaV3_3G017970.1 Csa03g01797 522702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g01797 415 MobiDBLite consensus disorder prediction 368 415 - -
Csa03g01797 415 MobiDBLite consensus disorder prediction 1 40 - -
Csa03g01797 415 Pfam Myb-like DNA-binding domain 260 311 IPR001005 -
Csa03g01797 415 MobiDBLite consensus disorder prediction 315 348 - -
Csa03g01797 415 SUPERFAMILY Homeodomain-like 256 312 IPR009057 -
Csa03g01797 415 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 259 312 IPR006447 GO:0003677
Csa03g01797 415 MobiDBLite consensus disorder prediction 12 40 - -
Csa03g01797 415 PANTHER TRANSCRIPTION REPRESSOR KAN1 1 413 - -
Csa03g01797 415 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 1 413 IPR044847 GO:0000976|GO:0006355|GO:0010158
Csa03g01797 415 MobiDBLite consensus disorder prediction 315 415 - -
Csa03g01797 415 Gene3D - 258 315 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00737 Csa-Chr1:4660574 Csa03g01797 Csa-Chr3:13675525 2.60E-38 dispersed
Csa03g00139 Csa-Chr3:1078308 Csa03g01797 Csa-Chr3:13675525 1.37E-42 dispersed
Csa03g01797 Csa-Chr3:13675525 Csa05g01612 Csa-Chr5:19070170 5.33E-41 dispersed
Csa03g01797 Csa-Chr3:13675525 Csa03g04582 Csa-Chr3:39874462 1.90E-53 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31232 PF00249 Myb_DNA-binding 1.90E-05 CL0123 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g01797 - - csv:101204946 709.909