Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g01819 ATGCGATGCAGGTTAGCAGAACCACAGGAACTTCACCAACCCCAAAGTCTCAATCATTTTCCACTGCTCAGATGTCTTCTTCCTTCTTTTCTCCTTCTTCCGCTTTCCTTTTTCCTCACTCTCTATTTATTCATTTTTCTCCTTCCATTTTCTACCATAACTCAATCTTCTTCTTCTTCTTATTCTTCTTCAACAACAACAGCAACAACAATGGGCAGCATTGAATCAGAAAGAACTGTTACAGGTTTCGCCGCCAAAGACCCATCTGGAATTCTCTCTCCTTATACTTACACTCTCAGAAACACCGGTCCCCAAGATGTTTTCATCAAAGTCATTTGCTGTGGAATCTGCCACTCTGATCTTCACCAAGTCAAGAACGAGCTCGGCATGTCCAATTACCCCATGGTTCCTGGACACGAAGTTGTCGGAGAAGTGGTGGAGCTTGGATCGGAAGTGGATCGTTTCAGAATTGGGGAATTGGTTGGAGTTGGGTGTATTCTTGGATCTTGTTCCACTTGTAGTCCTTGTAACACCGATAAGGAGCAGTACTGTCATAAGAGAATCTGGACTTATAATGATGTGTATCACGACGGCCGTCCCACCCAAGGCGGTTTCTCCTCCGCCATGGTCGTCCACCAAAAGTTTGTTGTAAGAATCCCAGAAGGGATGTCGCCGGAGCAGGCGGCGCCGCTGCTGTGCGCGGGAGTGACGGTGTACAGCCCATTGAGTCACTTTGGACTGAAACAGAGTGGGCTAAGAGGCGGAATTTTGGGATTGGGCGGCGTTGGACATATGGGTGTGAAAGTGGCAAAGGCTTTGGGCCATCACGTGACGGTGATAAGCTCGTCGGAGAAGAAAAGAGAGGAGGCTCTGGAACATCTCGGTGCCGACGATTACTTGGTCAGCTCCGACAAGGCTCAAATGGACAGAGCCATTGACTCACTCGATTACATTATCGATACCGTCCCTGTTTTTCATCCACTGGAGCCATATCTGTCACTGCTAAAACTCGACGGCAAATTGATCTTGATGGGTGTCATTAATACTCCATTACAATTTGTTTCCCCTCTCCTTATGATCGGGAGGAAGACGATTACAGGGAGCTTCATCGGAAGTATGCAAGAGACGCAAGAAGTATTGGATTTCTTTAAAGAGAAGGAACTGACGTCCATGATTGAAGTGGTAAAGGTTGATTACATAAACAAGGCTTTGGAGAGGTTGGAGAAGAACGATGTTAGATACAGGTTCGTGGTCGACGTTGCCGGAAGTAAGATGCCTGAGTGA 1284 46.88 MRCRLAEPQELHQPQSLNHFPLLRCLLPSFLLLPLSFFLTLYLFIFLLPFSTITQSSSSSYSSSTTTATTMGSIESERTVTGFAAKDPSGILSPYTYTLRNTGPQDVFIKVICCGICHSDLHQVKNELGMSNYPMVPGHEVVGEVVELGSEVDRFRIGELVGVGCILGSCSTCSPCNTDKEQYCHKRIWTYNDVYHDGRPTQGGFSSAMVVHQKFVVRIPEGMSPEQAAPLLCAGVTVYSPLSHFGLKQSGLRGGILGLGGVGHMGVKVAKALGHHVTVISSSEKKREEALEHLGADDYLVSSDKAQMDRAIDSLDYIIDTVPVFHPLEPYLSLLKLDGKLILMGVINTPLQFVSPLLMIGRKTITGSFIGSMQETQEVLDFFKEKELTSMIEVVKVDYINKALERLEKNDVRYRFVVDVAGSKMPE* 428
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 13943841 13946009 + CsaV3_3G018190.1 Csa03g01819 522724
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g01819 427 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 138 152 IPR002328 GO:0008270|GO:0016491
Csa03g01819 427 CDD CAD1 81 419 - -
Csa03g01819 427 Gene3D - 234 390 - -
Csa03g01819 427 PANTHER ALDEHYDE REDUCTASE 75 425 - -
Csa03g01819 427 Gene3D - 83 420 - -
Csa03g01819 427 SMART PKS_ER_names_mod 90 418 IPR020843 GO:0016491
Csa03g01819 427 PANTHER CINNAMYL ALCOHOL DEHYDROGENASE 2-RELATED 75 425 - -
Csa03g01819 427 SUPERFAMILY GroES-like 87 251 IPR011032 -
Csa03g01819 427 Pfam Alcohol dehydrogenase GroES-like domain 105 218 IPR013154 -
Csa03g01819 427 Pfam Zinc-binding dehydrogenase 261 384 IPR013149 -
Csa03g01819 427 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 223 388 IPR036291 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g01819 Csa-Chr3:13943841 Csa05g00138 Csa-Chr5:746059 3.94E-95 dispersed
Csa03g04299 Csa-Chr3:37636221 Csa03g01819 Csa-Chr3:13943841 2.84E-113 transposed
Csa06g03097 Csa-Chr6:26534763 Csa03g01819 Csa-Chr3:13943841 1.30E-123 transposed
Csa03g01819 Csa-Chr3:13943841 Csa07g00715 Csa-Chr7:5097058 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g01819 K00083 - csv:101222395 693.73