Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g01823 ATGATTCACACCAACAAACCATGCCTCTTTCTTGCTCTCTTTTCCACTTTCACTTTCTTTTTCCCTTCTTTTGCTCTCAACACCGATGCCACTCTCTTGATTTCTCTCAAACGCTCCATTCTCGGCGATCCCTTGTCTGTTTTCGCTAATTGGAATGTCTATGACGATACCCCTTGTTCCTGGCTTGGAGTTACCTGCACCGACCTTCGAGGCTATGGCGGCGGATGGTCAGATTTCCTCAGAGTCACTGCTCTCTCCCTCCCCAACAGTCAACTTCTGGGTTCCATTCCTGATGAGCTTGGAAGGATCGAACACCTTCGTCTTCTTGATCTTTCTGGTAATTTCTTTAATGGGTCTCTTCCCTTTACTATTTTTAATGCTTCAGAGCTTCGGATTCTTTCTCTTTCCAACAATGTTATTTCCGGCGAGTTGCCGATCGACATTGGGGGTTTGAAGAGTCTTCAGGTTTTGAATCTCTCTGATAATGCGTTGGCTGGGAAAGTGCCACAAAATCTTACTGCTCTGAAGAATCTTACTGTCGTTTCTCTGAGGAGTAATTACTTTACCGGAGAGATTCCGAGGAACTTTAGTTCCGTTGAGGTTTTGGATCTGTCTTCGAATCTGTTTAATGGGTCTCTGCCGGCGTATTTTGGTGGGGAGAAACTCCGGTATTTGAACTTCTCTTACAATAAAATTTCAAGTTCTATTCCGTTGGAATTCGCTAAGAGGATTCCAGTGAATGTGACTATGGATCTTTCTTTTAATAATCTCACCGGAGCGATTCCTCAGTCGATTGCTCTGCTCAGCCAGAAAGCAGAGGTGTTCGCCGGAAATGAAGATCTCTGTGGGAAGCCATTGAAACATCTCTGTTCAATTCCTTCTTCACTCACAACTCCCCCCAATGTTTCTGAAACTTCATCTTCTTCTCCAGCCATCGCCGCCATACCCAAAACAATAGGCTCTGTTCCGGCAACACAGTCCCCCAGAGGTCCAAACGATACACAAACTTCTCAGCCACAAAACACCATGAAACCCATCACAATAGTTGCAATAACCGTCGGAGACCTCGCCGGGATCGCCATTCTCGCCGCAGTGATTCTCTACATCTACCATTACCGGAAACATAAAACCCCCAGTTTCAAAACCGCAAAATCCACCGACAAGAAACGGCCGATTGACTCAGAAAAAAACCCTCAAACTAATCAGAAAAAACCCTCATCATCAGTGTTGTTTTGTTTAGCCAACAAAGGAGAAGAGACATCAGAGGCGACGAGTTCTTCAGACGGCGAAGAACAGAGAGAGAAACCCGGAATGACCCAGGACAGAGAGAATAGAGACAATAAGAAGAACGGAGTACTAGTGACAGTGGACGGAGAAACAGAGCTGGAATTGGAAACTCTGTTAAAGGCATCGGCGTATATAGTTGGAGCAAGCGGGGGGAGCATCGTGTACAAGGCGGTGCTGGAGGACGGGACGGCGTTGGCGGTGAGAAGAATCGGCGACGTGAGCGTGGAGAGATTGAGGGATTTTGAGAGCCAAGTGAGAGGGATTGCTAAGATTCGACATCAAAATTTGGTGAAAATTCGAGGGTTGTTTTGGGGAGAAGATGAGAAGCTCATCATCTATGATTATGTCTCAAATGGCTGCCTTTCAACTTCCCTTCACAGAAAACCGAGTTCATCGTCTTCTTCCCAGAGCCACCTATCGTTTGAAGTCCGATTAAAAATTGCCAGAGGAATAGCCCGAGGACTTGCCTTCATCCACGACAAGAAGCACGTCCATGGCAACCTCAAGCCTTCCAACATCCTCTTAAACGCCGAAATGGAGCCCTTAATCGCCGATCTCGGCCTTGACAAGCTCCTCTCCGGAAGGTCCAAGATCGCAATCGCCTCCAGTTCTGCACGGAACTTGGGCAGCCACAGATCCACCCCGAATCGCGAGAACCAAGACGGGAGCGGCGTTGGAAGCCCGTCGGTGAGCCTGGGATCAGCGTACCAGGCGCCGGAATCGCTGAAGAATGTGAAATCGAGTCCTAAATGGGACGTGTACTCGTTCGGAGTGATTCTAGTGGAGCTTGTGAGTGGGAAGATTGGGACGGAGAGAGAATTTGGGAGTGGTGAAGAGGAAGGGAGGATTAAGAAGATGGTGGATTTGGCGATCAGAGGGGAAGTGGAAGGGAAAGAAGAAGCGGTAATGGGGATATTTAGATTAGGGTTTAGTTGTGTTAATTTGGTGCCTCAAAAGAGACCCACCATGAAAGAGGCTCTCCAAGTTCTTGACAAAATTGCTTCTTCTATCACCTAA 2304 47.44 MIHTNKPCLFLALFSTFTFFFPSFALNTDATLLISLKRSILGDPLSVFANWNVYDDTPCSWLGVTCTDLRGYGGGWSDFLRVTALSLPNSQLLGSIPDELGRIEHLRLLDLSGNFFNGSLPFTIFNASELRILSLSNNVISGELPIDIGGLKSLQVLNLSDNALAGKVPQNLTALKNLTVVSLRSNYFTGEIPRNFSSVEVLDLSSNLFNGSLPAYFGGEKLRYLNFSYNKISSSIPLEFAKRIPVNVTMDLSFNNLTGAIPQSIALLSQKAEVFAGNEDLCGKPLKHLCSIPSSLTTPPNVSETSSSSPAIAAIPKTIGSVPATQSPRGPNDTQTSQPQNTMKPITIVAITVGDLAGIAILAAVILYIYHYRKHKTPSFKTAKSTDKKRPIDSEKNPQTNQKKPSSSVLFCLANKGEETSEATSSSDGEEQREKPGMTQDRENRDNKKNGVLVTVDGETELELETLLKASAYIVGASGGSIVYKAVLEDGTALAVRRIGDVSVERLRDFESQVRGIAKIRHQNLVKIRGLFWGEDEKLIIYDYVSNGCLSTSLHRKPSSSSSSQSHLSFEVRLKIARGIARGLAFIHDKKHVHGNLKPSNILLNAEMEPLIADLGLDKLLSGRSKIAIASSSARNLGSHRSTPNRENQDGSGVGSPSVSLGSAYQAPESLKNVKSSPKWDVYSFGVILVELVSGKIGTEREFGSGEEEGRIKKMVDLAIRGEVEGKEEAVMGIFRLGFSCVNLVPQKRPTMKEALQVLDKIASSIT* 768
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 13971854 13976025 + CsaV3_3G018230.1 Csa03g01823 522728
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g01823 767 MobiDBLite consensus disorder prediction 380 397 - -
Csa03g01823 767 MobiDBLite consensus disorder prediction 633 660 - -
Csa03g01823 767 Pfam Leucine rich repeat 105 164 IPR001611 GO:0005515
Csa03g01823 767 MobiDBLite consensus disorder prediction 321 341 - -
Csa03g01823 767 Gene3D Phosphorylase Kinase; domain 1 436 544 - -
Csa03g01823 767 PANTHER OS04G0122200 PROTEIN 21 764 - -
Csa03g01823 767 Pfam Protein kinase domain 475 757 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa03g01823 767 ProSiteProfiles Protein kinase domain profile. 469 762 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa03g01823 767 Pfam Leucine rich repeat N-terminal domain 27 66 IPR013210 -
Csa03g01823 767 MobiDBLite consensus disorder prediction 379 451 - -
Csa03g01823 767 PANTHER LEUCINE-RICH REPEAT PROTEIN KINASE FAMILY PROTEIN 21 764 - -
Csa03g01823 767 Gene3D Ribonuclease Inhibitor 26 196 IPR032675 -
Csa03g01823 767 SUPERFAMILY Protein kinase-like (PK-like) 475 760 IPR011009 -
Csa03g01823 767 ProSiteProfiles Leucine-rich repeat profile. 221 242 IPR001611 GO:0005515
Csa03g01823 767 SUPERFAMILY L domain-like 27 287 - -
Csa03g01823 767 MobiDBLite consensus disorder prediction 426 451 - -
Csa03g01823 767 Gene3D Ribonuclease Inhibitor 197 292 IPR032675 -
Csa03g01823 767 Gene3D Transferase(Phosphotransferase) domain 1 545 766 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g02737 Csa-Chr2:23851434 Csa03g01823 Csa-Chr3:13971854 0 dispersed
Csa03g01823 Csa-Chr3:13971854 Csa05g02059 Csa-Chr5:23897339 1.79E-133 dispersed
Csa03g01823 Csa-Chr3:13971854 Csa05g02641 Csa-Chr5:27467713 1.85E-135 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77997 PF00069 Pkinase 1.70E-28 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g01823 - - csv:101203801 1390.17