Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g01837 ATGGCGACTCAGGTGCAAGCTCAGCCTCAGAATGCTATTTCCGGCATCAATCCAGCGGCGAATGGCGGTGCCAATTTTGTCACTACTTCTTTGTACGTCGGAGATCTGGACCTGAATGTCACGGATTCGCAGCTTTATGACATTTTCAATCAGGTGGGCCAGGTAGTTTCGGTTCGGGTTTGCCGAGACTTGACGACCCGGCGATCTCTCGGTTATGGCTATGTCAACTACAGCAACCCACAAGATGCTGCAAGAGCATTGGATGTGCTGAACTTTACCCCTTTGAATGGAAAGCCTATTAGAGTGATGTATTCTCACCGTGACCCAAGCATTCGCAAGAGTGGGGCTGGAAATATATTCATCAAGAATTTAGACAAGGCAATTGACCACAAAGCTCTACATGATACATTTTCTGCATTTGGTAGTATCCTGTCTTGCAAAGTGGCTTTAGATTCCTCTGGCCAGTCAAAAGGCTATGGTTTTGTGCAATTTGACAATGAGGAGTCTGCTCTGAAAGCTATTGAGAAGCTGAACGGTATGCTGTTGAATGATAAGCAAGTTTATGTAGGACCTTTTCTTCGTAAACAAGAAAGAGATGGTGTTGTTGACAAATCCAAATTTAACAATGTATTTGTAAAAAATCTTTCTGAGACTACTACTGAAGAGGATTTGAACAAAGCTTTTTCTGAATTTGGGACACTCACGAGTATTGTTGTGATGAGGGATGCTGATGGCAAATCAAGATGCTTTGGATTTGTTAATTTTGAAAATGCCGATGATGCTGCTAGGGCAGTTGACACCCTTAACGGAAAGTTAGTTGATGATAAGGAGTGGTATGTTGGAAAAGCACAGAAAAAATCTGAAAGAGAAGTTGAATTAAAGCACCGGTTTGAACAAACTATGAAAGAAGCAGCTGACAAGTACCAAGGGGCAAATTTGTACATTAAAAATTTAGATGATAGCATTGGTGATGATAAGCTTAAGGAGCTGTTTGCTCCATTTGGCACAATCACCTCATGCAAGGTCATGCGCGACCCCAATGGCATAAGCAGAGGTTCTGGATTTGTTGCATTCTCAACCCCTGATGAGGCATCTAGAGCTCTTGTGGAGATGAATGGCAAAATGGTTGTTAGTAAACCATTATATGTAGCACTTGCACAGCGGAAGGAAGATAGGAGAGCCAGATTGCAGGCTCAGTTCTCTCAAATACGGTCTGTTCCCATGCCTGCTTCAGTTGCCCCACGGATGCCAATATATCCCCCTGGTGGACCAGGTATCGGACAGCAGTTGTTTTATGGTCAAGCTCCTCCTGCAATGATTCCTTCCCAAGGTGGGTTTGGTTATCAGCAGCAGCTTGTTCCTGGTATAAGGCCTGGTGGAGGACCAATGCCAAATTTCTTTGTCCCAATGGTTCAGCAGGGTCAGCAAGGCCAGCGCCCTGGGGGCAGACGTGCAGGAGCTGTCCAGCAAACTCAGCAGCCTGTTCCAATGATGCAACAACAGATGTTGCCTAGAGGAGGACGTGTCTATCGCTATCCCCCTGGAAGAGGATTGCCTGATGTTGCTATGCCTGGTGTTGCTGGAGGCATGTTTTCTGTTCCATATGATATGGGAGGTATGCCATTGCGTGATGCGGCACACTCTCAACCTATCCCTATTGGTGCACTGGCTTCTGCTCTGGCAAATGCTACTCCAGACCAACAGAGAACAATGCTGGGGGAGAATCTTTACCCGCTTGTGGAACAGTTAGAGCCTGACAACGCGGCCAAGGTAACTGGAATGCTTCTGGAGATGGACCAGACTGAGGTTTTGCATTTACTAGAGTCCCCGGAAGCCTTGAAGGCGAAAGTAGCTGAAGCTATGGAGGTTTTGAGGAATGTTGCGGCAGCTCAGCAGCAGCAGCAAGCTGGCAATGCAGCAGATCAGCTAGCTTCTCTGTCGCTGACGGAGAACCTCGTGTCGTGA 1965 46.56 MATQVQAQPQNAISGINPAANGGANFVTTSLYVGDLDLNVTDSQLYDIFNQVGQVVSVRVCRDLTTRRSLGYGYVNYSNPQDAARALDVLNFTPLNGKPIRVMYSHRDPSIRKSGAGNIFIKNLDKAIDHKALHDTFSAFGSILSCKVALDSSGQSKGYGFVQFDNEESALKAIEKLNGMLLNDKQVYVGPFLRKQERDGVVDKSKFNNVFVKNLSETTTEEDLNKAFSEFGTLTSIVVMRDADGKSRCFGFVNFENADDAARAVDTLNGKLVDDKEWYVGKAQKKSEREVELKHRFEQTMKEAADKYQGANLYIKNLDDSIGDDKLKELFAPFGTITSCKVMRDPNGISRGSGFVAFSTPDEASRALVEMNGKMVVSKPLYVALAQRKEDRRARLQAQFSQIRSVPMPASVAPRMPIYPPGGPGIGQQLFYGQAPPAMIPSQGGFGYQQQLVPGIRPGGGPMPNFFVPMVQQGQQGQRPGGRRAGAVQQTQQPVPMMQQQMLPRGGRVYRYPPGRGLPDVAMPGVAGGMFSVPYDMGGMPLRDAAHSQPIPIGALASALANATPDQQRTMLGENLYPLVEQLEPDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAAAQQQQQAGNAADQLASLSLTENLVS* 655
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 14099253 14104867 + CsaV3_3G018370.1 Csa03g01837 522742
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g01837 654 Gene3D - 548 632 - -
Csa03g01837 654 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 208 285 IPR000504 GO:0003723
Csa03g01837 654 SUPERFAMILY RNA-binding domain, RBD 29 198 IPR035979 GO:0003676
Csa03g01837 654 Gene3D - 119 198 IPR012677 -
Csa03g01837 654 Pfam Poly-adenylate binding protein, unique domain 560 624 IPR002004 GO:0003723
Csa03g01837 654 MobiDBLite consensus disorder prediction 473 494 - -
Csa03g01837 654 PANTHER POLYADENYLATE-BINDING PROTEIN 18 634 - -
Csa03g01837 654 SUPERFAMILY PABC (PABP) domain 495 638 IPR036053 GO:0003723
Csa03g01837 654 SMART rrm1_1 209 281 IPR000504 GO:0003723
Csa03g01837 654 SMART rrm1_1 30 103 IPR000504 GO:0003723
Csa03g01837 654 SMART rrm1_1 312 384 IPR000504 GO:0003723
Csa03g01837 654 SMART rrm1_1 118 190 IPR000504 GO:0003723
Csa03g01837 654 CDD RRM4_I_PABPs 310 388 - -
Csa03g01837 654 PANTHER RNA BINDING PROTEIN 18 634 - -
Csa03g01837 654 CDD RRM2_I_PABPs 115 191 IPR045305 -
Csa03g01837 654 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 552 629 IPR002004 GO:0003723
Csa03g01837 654 SUPERFAMILY RNA-binding domain, RBD 208 392 IPR035979 GO:0003676
Csa03g01837 654 CDD RRM1_I_PABPs 30 109 - -
Csa03g01837 654 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 117 189 IPR000504 GO:0003723
Csa03g01837 654 SMART rrm2_1 118 190 IPR003954 GO:0003676
Csa03g01837 654 SMART rrm2_1 30 103 IPR003954 GO:0003676
Csa03g01837 654 SMART rrm2_1 312 384 IPR003954 GO:0003676
Csa03g01837 654 SMART rrm2_1 209 281 IPR003954 GO:0003676
Csa03g01837 654 CDD RRM3_I_PABPs 207 286 - -
Csa03g01837 654 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 311 388 IPR000504 GO:0003723
Csa03g01837 654 Gene3D - 296 396 IPR012677 -
Csa03g01837 654 Gene3D - 1 118 IPR012677 -
Csa03g01837 654 Gene3D - 199 295 IPR012677 -
Csa03g01837 654 TIGRFAM PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family 30 625 IPR006515 GO:0003723
Csa03g01837 654 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 29 107 IPR000504 GO:0003723
Csa03g01837 654 SMART poly_2 564 627 IPR002004 GO:0003723
Csa03g01837 654 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 119 187 IPR000504 GO:0003723
Csa03g01837 654 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 210 278 IPR000504 GO:0003723
Csa03g01837 654 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 31 101 IPR000504 GO:0003723
Csa03g01837 654 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 313 381 IPR000504 GO:0003723
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g01588 Csa-Chr3:11779608 Csa03g01837 Csa-Chr3:14099253 8.58E-07 dispersed
Csa03g01837 Csa-Chr3:14099253 Csa06g00488 Csa-Chr6:4128153 0 dispersed
Csa03g02049 Csa-Chr3:16611926 Csa03g01837 Csa-Chr3:14099253 8.50E-06 dispersed
Csa07g02337 Csa-Chr7:21640453 Csa03g01837 Csa-Chr3:14099253 1.69E-12 dispersed
Csa04g00852 Csa-Chr4:6030697 Csa03g01837 Csa-Chr3:14099253 8.86E-09 transposed
Csa06g02820 Csa-Chr6:24601941 Csa03g01837 Csa-Chr3:14099253 4.58E-13 transposed
Csa05g00109 Csa-Chr5:543032 Csa03g01837 Csa-Chr3:14099253 2.11E-09 transposed
Csa03g01837 Csa-Chr3:14099253 Csa07g00747 Csa-Chr7:5262014 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g01837 K13126 - csv:101219802 1229.54