Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g01844 ATGCCTGGGACTGGGAGTGTTGCTGTTCAACCTTTGGATTTGAGCCTACACATTCCATACCATTTCAGATGCCCCATTTCTCTTGAGCTCATGCGCGATCCTGTTACCGTCAGCACCGGTCAGACTTACGACCGTTCAAGTATTGAGTCATGGGTTGCCACCGGAAACACTACCTGTCCGGTTACTCGGGCTCCACTCACCGACTTCACCCTCATCCCTAACCATACTCTGCGTCGGCTAATCCAGGAGTGGTGTGTTGCCAATCGGTCTTATGGTGTTGAGCGGATTCCCACTCCCAAGCAGCCGGCGGAACCTTCTTTGGTTAGGTCTTTGCTTGCTCAAGCTTCGTCGAGATCGAGTGGTTCCAGTTTGAGAATCTCGGCTTTGCGTCGGTTGAAAGGACTCGCTCGTGACTCGGATAAGAATCGGTCTCTGATTTCATCGCTTAATGCTCGTGAAATTCTTCTGGATGTCGTGTTTTCCAATTTGGATTCGGGTTCGGATTCGTTTTCACCTGATTTGAGCCGTGAATCGCTTGCGCTTCTTGTGATGTTACCGCTCACGGAATCTGAGTGTGTTCTTGTTGCGTCTGATCCTCAACGGATTGGTTACCTTTCACATCTTCTCTTTGATTCTTCCATTGAAGACCGAATCAATGCGGCCGCGTTGATTGAGACTGTAATTGCCGGAACTCGAGCGTCGGAGCTTCGAACCCAAATTTGTGGAATCGATGAATTGTTTGAAGGCGTGGTTGAAATTCTTAGAGATCCAACAGCGTATCCACGAGCACTCAAGGTCGGAGTTAAGGCTTTATTTGCTCTCTGTTTGGTGAAACAAACCAGGCATAAGGCAGTTTCCGCCGGCGCCGCTGAGATTATCATCGACCGATTTCCCGATTTGGAGAAGTACGATGCCGAGCGAGCCCTAGCTACGATTGAACTCATTTGCAGAATTCCGACCGGTTGCGATGCGTTTGCAGCTCACGCCCTCACCGTTCCCCTTTTGGTGAAAGTCATTTTGAAGATCTCGGACAGAGCGACGGAGTCTGCTGTCGGAGCGTTGGTGTCGCTGTGTTCGGCGTCGGAGGAGAATCGGCGGGAGGCGGTGGCGGCGGGGATATTGACACAGTTGTTGTTGTTGGTGCAAAGTGATTGTACGGAGAGAGTTAAACGGAAATCGCAGGTGTTGCTGAAGCTTCTTCGAGATTCATGGCCACAAGAGTCCGTTGGAAATTCGGACGATTATGCTTGCAGTGAAATTGTGGTACCATTTTGTTAA 1278 50.16 MPGTGSVAVQPLDLSLHIPYHFRCPISLELMRDPVTVSTGQTYDRSSIESWVATGNTTCPVTRAPLTDFTLIPNHTLRRLIQEWCVANRSYGVERIPTPKQPAEPSLVRSLLAQASSRSSGSSLRISALRRLKGLARDSDKNRSLISSLNAREILLDVVFSNLDSGSDSFSPDLSRESLALLVMLPLTESECVLVASDPQRIGYLSHLLFDSSIEDRINAAALIETVIAGTRASELRTQICGIDELFEGVVEILRDPTAYPRALKVGVKALFALCLVKQTRHKAVSAGAAEIIIDRFPDLEKYDAERALATIELICRIPTGCDAFAAHALTVPLLVKVILKISDRATESAVGALVSLCSASEENRREAVAAGILTQLLLLVQSDCTERVKRKSQVLLKLLRDSWPQESVGNSDDYACSEIVVPFC* 426
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 14148559 14153093 - CsaV3_3G018440.1 Csa03g01844 522749
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g01844 425 SUPERFAMILY ARM repeat 107 400 IPR016024 -
Csa03g01844 425 SUPERFAMILY RING/U-box 16 93 - -
Csa03g01844 425 Pfam U-box domain 18 89 IPR003613 GO:0004842|GO:0016567
Csa03g01844 425 ProSiteProfiles U-box domain profile. 17 91 IPR003613 GO:0004842|GO:0016567
Csa03g01844 425 CDD RING-Ubox_PUB 22 63 IPR045210 -
Csa03g01844 425 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 9 421 - -
Csa03g01844 425 SMART Ubox_2 21 84 IPR003613 GO:0004842|GO:0016567
Csa03g01844 425 Gene3D - 93 413 IPR011989 -
Csa03g01844 425 PANTHER WDSAM1 PROTEIN 9 421 IPR045185 GO:0061630
Csa03g01844 425 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 17 91 IPR013083 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g01627 Csa-Chr2:15446800 Csa03g01844 Csa-Chr3:14148559 2.02E-51 dispersed
Csa02g01879 Csa-Chr2:17861302 Csa03g01844 Csa-Chr3:14148559 2.36E-40 dispersed
Csa03g01844 Csa-Chr3:14148559 Csa05g01122 Csa-Chr5:11451621 3.82E-69 dispersed
Csa03g04556 Csa-Chr3:39679441 Csa03g01844 Csa-Chr3:14148559 4.00E-20 dispersed
Csa04g02494 Csa-Chr4:24811770 Csa03g01844 Csa-Chr3:14148559 9.95E-42 dispersed
Csa03g01844 Csa-Chr3:14148559 Csa03g03495 Csa-Chr3:31295374 2.55E-60 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g01844 - - csv:101219319 791.956