Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g01849 ATGGCCGCCACCGCACTGAGTAGAGCTTTGTTTCTAATGGGCTTTCTTCTATTTCTTCAACTTCAGCTTCCTGAAACAATGGCGGACTGTCCCTTGGACTTGAGTGGATCAAACTTTACTTTAGTTGCCTCTATTTGCTCTAACCCCAATGAAAGAGGGAAGTGCTGCCGCCATATCAATGCATTTGTTGCAGTTTCTGTTGCTCATCTTGCAAATGCAACAGGTGAATTGGGAGTTTCTTCAGACTTATCTGACATTTGCTTGCAATTTATACTTCAAACCATGGGACTGTATGGAGTTCCTAGAAATGCCATGGTTTTCTGTGGGGTTGGAACCAAAATTCCAGTGAACTATGCGTGTAGAGGTCGAGAGACCGTCACACAGATGCTGGAATCTCCAAAATTTACAAATGTCAGTGAAAATTGCAAGTTGCCAATATCAGAGGAGAGTACTTGTAGGAAGTGTATTAATTCTGGAATTTTATATCTCCGAAATCTGATTGGAAGAGAAGATAATATAACGCTAAATACTTGTCGTGACGCTACGTTTGTTGCACTTGCTAGCCAACTTGATCCTGCTTCAGTTATTGATCTTGCAACCTGCTTCTTTGGAGTTCAAGGCTTTCACAAGCCTCCAGCTCCACCCCCATCTTTGACTACACCAAAAATTTCCCCAAGTCCATCAGCTGCTGAAAGCCCAGGGTCACTGACGCTTGATGTTGCCGGTGATAAAAGTCACCAACATCATTCCTACCATCTAACATTAGTGGCAGGTATTGGCATCGCGGTGACTGTCGGTTCTGTAATGATGCTGGTTGTCTTGATTGTGTTGATTCGAAGGAAAAGCCGAGAGCTAAAGGATTCTGATAAGATGGATGCCAACTCTTCAAAATCTTTCCCCTCTCGTCCCATCAAAAAGTATCAGGAAGGACCTTCCATGTTTAAAAAGTTCAGCTATAAGGAGATCAAGAAGGCAACAGATAGTTTTAGTACAACAATTGGTCAAGGAGGATATGGAACTGTTTATAAAGCTCAATTCACTGATGACGTAGTAGTAGCTGTGAAGAGGATGAACAAAGTCTCCGAGCAGGGTGAAGATGAATTTGGCAGAGAAATCGAGCTGCTTGCAAGATTACATCACCGACATCTCGTTGCCTTAAGAGGCTTTTGTGTTGAAAAGCATGAACGGTTCCTTTTGTACGAGTTTATGGCTAATGGAAGCTTGAAGGACCATCTTCATGCTCCTGGCAGGACCCCTCTAAGTTGGCGGACAAGAATCCAAATTGCCATCGATGTTGCCAATGCTCTGGAGTATCTTCACTATTATTGTGATCCCCCACTGTGCCACAGAGACATCAAGTCCAGCAACATTTTACTGGATGAGAACTTTGTAGCTAAGGTTGCCGATTTTGGCCTTGCACATGCTTCAAAGGGCGGTTCTGTTTTCTTTGAACCTGTAAATACAGATATCCGAGGAACGCCAGGTTATATGGATCCTGAGTATGTCATCACGCAAGAACTTACTGAGAAAAGTGATATATACAGCTACGGCGTACTACTTCTGGAAATAGTTACTGGCAGACGCGCTATACAAGACGGGAAGAATCTGGTTGAATGGTCCCTAGGGTACATGATTTCAGATTCAAGGATATCTGAATTAGTAGATCCAAGTATCAAGGGTTGTTTTAACTTGGACCAACTTCACACGATCGTGTCAATTGTGAGATGGTGCACCGAGGGAGAAGGCAGGGCAAGGCCTTCAATTAAGCAGGTGCTTCGACTGTTGTACGAGAGTTCAGATCCAATGCATCAAGGGCTCATGGAGGCTGTGGATGATGAAGAATATGGAGGGACTGAAGGGAGACAGAGCATGAGCAAGAGAAAAATGCATAAAAGTGATGTGATTTTCCATAGTGGAGATGGAAGGTATCTTGCTTCTTCATCAAGCACATCTAGGTCATATTGTAGTAGAAGCTTTTTACTTGAAACTGGTTCACCACAGTCTCCTCCCAATATTTATTCTGCCTCAGACCAATTATTTTAG 2043 43.22 MAATALSRALFLMGFLLFLQLQLPETMADCPLDLSGSNFTLVASICSNPNERGKCCRHINAFVAVSVAHLANATGELGVSSDLSDICLQFILQTMGLYGVPRNAMVFCGVGTKIPVNYACRGRETVTQMLESPKFTNVSENCKLPISEESTCRKCINSGILYLRNLIGREDNITLNTCRDATFVALASQLDPASVIDLATCFFGVQGFHKPPAPPPSLTTPKISPSPSAAESPGSLTLDVAGDKSHQHHSYHLTLVAGIGIAVTVGSVMMLVVLIVLIRRKSRELKDSDKMDANSSKSFPSRPIKKYQEGPSMFKKFSYKEIKKATDSFSTTIGQGGYGTVYKAQFTDDVVVAVKRMNKVSEQGEDEFGREIELLARLHHRHLVALRGFCVEKHERFLLYEFMANGSLKDHLHAPGRTPLSWRTRIQIAIDVANALEYLHYYCDPPLCHRDIKSSNILLDENFVAKVADFGLAHASKGGSVFFEPVNTDIRGTPGYMDPEYVITQELTEKSDIYSYGVLLLEIVTGRRAIQDGKNLVEWSLGYMISDSRISELVDPSIKGCFNLDQLHTIVSIVRWCTEGEGRARPSIKQVLRLLYESSDPMHQGLMEAVDDEEYGGTEGRQSMSKRKMHKSDVIFHSGDGRYLASSSSTSRSYCSRSFLLETGSPQSPPNIYSASDQLF* 681
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 14225578 14231887 + CsaV3_3G018490.1 Csa03g01849 522754
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g01849 680 SUPERFAMILY Protein kinase-like (PK-like) 308 596 IPR011009 -
Csa03g01849 680 Pfam SPARK 28 160 IPR043891 -
Csa03g01849 680 MobiDBLite consensus disorder prediction 213 239 - -
Csa03g01849 680 Pfam Protein kinase domain 331 593 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa03g01849 680 PANTHER OS01G0750732 PROTEIN 8 674 - -
Csa03g01849 680 SMART serkin_6 327 602 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa03g01849 680 PANTHER BNAC06G02630D PROTEIN 8 674 - -
Csa03g01849 680 CDD STKc_IRAK 333 595 - -
Csa03g01849 680 ProSitePatterns Protein kinases ATP-binding region signature. 333 355 IPR017441 GO:0005524
Csa03g01849 680 MobiDBLite consensus disorder prediction 660 680 - -
Csa03g01849 680 Gene3D Phosphorylase Kinase; domain 1 289 402 - -
Csa03g01849 680 ProSiteProfiles Protein kinase domain profile. 327 606 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa03g01849 680 Gene3D Transferase(Phosphotransferase) domain 1 403 615 - -
Csa03g01849 680 ProSitePatterns Serine/Threonine protein kinases active-site signature. 447 459 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g01849 Csa-Chr3:14225578 Csa06g03855 Csa-Chr6:30576449 2.59E-74 dispersed
Csa06g02476 Csa-Chr6:22035820 Csa03g01849 Csa-Chr3:14225578 2.63E-58 dispersed
Csa03g01849 Csa-Chr3:14225578 Csa03g02276 Csa-Chr3:20261197 4.13E-77 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77998 PF00069 Pkinase 4.50E-48 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g01849 - - csv:101219079 1296.18