Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g01850 ATGAGCATTGCCGCGAATCAAAGAGGGTCCCGATCATGGGCCACCGCCGAGGAGTTGCCGGTGTCCATTGGGACTCCGATGCCTCCCAAGAAAAAATGGTCAAATGCGATGCCTCTGTTCATCGCTCTCGTCGTCGTAGCAGAGATTATCTTTCTTGGTCGCCTCGATGTGGCTAAAAATGTAGCTATGGTCGATTCATGGGCTGATTTGTTCTATCGTTCGCCGCCTTCCCTTCCACTGATCGACGAAGGCGATGACTTGAATTCCCGGTTCATTGACGGCGATCGGATTTCGGAATTGGGGATTTGTGAGGAGTGGTTGGAGAAAGAAGACGCTGTGACCTATTCTAGGGACTTCCAAAAGGAGCCGATTTTGGTTTCTGGGTCTAATGAGGGGAGGAAATCTTGTGCCGTAGAATGTGAATTTCAGGCCAGTCCAAGTAAGGATCCAGATGCTGCTTTTGGTTTGAATACCCAGGGTGGAATGCCTTCAATTATTCGATCCATGGAATCATCTCTTTATTATGCAGATATCAATATCGCCCAGGCACGACGGAATGGCTATAGTATAGTAATGACCACCAGTCTCTCATCGGATGTACCTGTTGGATACTTCTCCTGGGCCGAGTATGATATCATGGCTCCAGTGCAGGCAAAGAGTGAGAAAGCCCTTGCAGCTGCTTTCATTTCAAATTGTGGTGCGCGTAACTTCCGCCTGGAAGCTCTTGAGGCTCTTGAAAAGCTGAACGTCACAATAGATTCCTATGGTTCTTGTCACAGAAATCGTGATGGAAGCACAGTGAACAAATTGGAGGCTCTAAAGCGCTACAAGTTCAGCTTGGCTTTTGAAAATTCCAACGAGGAAGATTATGTGACAGAAAAATTTTTCCAATCTCTAGTTGCTGGAGCTATTCCAGTCGTTATTGGAGCTCCAAATATTCAAGATTTTGCTCCATCACCTACTTCATTTTTGCATATCGGGGAACTTTCAGATGTTAAGTCAGTTGCCAACTCTATGAAATACCTTGCAGCAAATCCTGAGGCATTCAACAATTCTCTGAGGTGGAAATATGAGGGTCCATCTGATTCTTTCAAAGCACTATTGGATATGGGAGCAGTTCATTCGTCATGTCGCCTTTGTATTCACGTGGCAACTGGTATTCGTGAGACCGAAGAGAAGGGTTTAGCATTCAAAAATCGACCATGTAAATGCACCAGAGGTTCTGAGACCGTTTATCACTTGTATGTTAGAGAAAGAGGAAGGTTTAATTCTGAGTCCGTTTTCTTAAGGTCGAGTAATCTGACGGTTGAAGGGCTGGCCTCAGCAGTGATTTCGAAGTTCACTTCTCTGAAGCACGAACCAATATGGAAGCAGGAAAGGCCTAAAAGCTTAAAAGGAGGTGATGAATTAAGGTTGTACAAAATATATCCAGTTGGGTCGACCCAGAGGCAAGCTTTATATACCTTCAGATTTAAAGGGGACTCTGATTTCAGAAGATTCGTGGAAGATAACCCTTGTGCTAAACTTGAAGCCATTTTTGTATAG 1545 44.85 MSIAANQRGSRSWATAEELPVSIGTPMPPKKKWSNAMPLFIALVVVAEIIFLGRLDVAKNVAMVDSWADLFYRSPPSLPLIDEGDDLNSRFIDGDRISELGICEEWLEKEDAVTYSRDFQKEPILVSGSNEGRKSCAVECEFQASPSKDPDAAFGLNTQGGMPSIIRSMESSLYYADINIAQARRNGYSIVMTTSLSSDVPVGYFSWAEYDIMAPVQAKSEKALAAAFISNCGARNFRLEALEALEKLNVTIDSYGSCHRNRDGSTVNKLEALKRYKFSLAFENSNEEDYVTEKFFQSLVAGAIPVVIGAPNIQDFAPSPTSFLHIGELSDVKSVANSMKYLAANPEAFNNSLRWKYEGPSDSFKALLDMGAVHSSCRLCIHVATGIRETEEKGLAFKNRPCKCTRGSETVYHLYVRERGRFNSESVFLRSSNLTVEGLASAVISKFTSLKHEPIWKQERPKSLKGGDELRLYKIYPVGSTQRQALYTFRFKGDSDFRRFVEDNPCAKLEAIFV* 515
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 14232868 14255375 - CsaV3_3G018500.1 Csa03g01850 522755
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g01850 514 Gene3D - 167 363 IPR038577 -
Csa03g01850 514 Pfam Glycosyltransferase family 10 (fucosyltransferase) C-term 220 385 IPR001503 GO:0006486|GO:0008417|GO:0016020
Csa03g01850 514 PANTHER ALPHA- 1,3 -FUCOSYLTRANSFERASE 33 491 IPR001503 GO:0006486|GO:0008417|GO:0016020
Csa03g01850 514 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 113 385 - -
Csa03g01850 514 PANTHER FUCOSYLTRANSFERASE-LIKE PROTEIN-RELATED 33 491 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g01850 Csa-Chr3:14232868 Csa06g00471 Csa-Chr6:4001625 7.82E-14 dispersed
Csa03g01850 Csa-Chr3:14232868 Csa07g00757 Csa-Chr7:5313624 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g01850 K00753 - csv:101202837 1028.47