Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g01871 ATGTCATTCCGAAGCATTGTTCGTGATGTGAGGGATAGTATTGGGAGCTTATCCAGACGGGGTTTTGAGGTCAAGTTGAGTGGTCATCATAGAGGAAAGTCCAATGCATCGTCGCTGAATGATCTACATGACCAGCCTCCTGTTGTTCAGAATGGCTGCTGGGCTAGTCTTCCACCCGAGCTGTTGTATGATGTCATTCGAAGACTTGAAGAGAGTGAAAACACATGGCCTTCACGAAAGAATGTTGTTGCCTGTGCTGCTGTATGTCGTTCTTGGAGAATTATGTGCATGGAGATAGTTAAAGGTCCAGAAATTTGTGGAAAGCTTACCTTCCCAGTGTCATTGAAGCAGCCAGGACCGCGTGATGGATCTGTACAGTGCTTCATTAAGAGGGATAAATCCAACCTAACATACCACCTCTACTTGTGTCTTAGCCCTGCTCTACTGGTTGAAAATGGGAAGTTTCTTCTTTCTGCGAAGCGTACACGAAGAACTACTAGCACGGAGTATATTATCTCAATGGATGCCGAAAACATTTCGAGATCAAGTAGCTCTTACATTGGAAAACTGAGGTCGAATTTTCTTGGAACAAAATTCATTGTTTATGATACCCAACCTCCGTACACTGCTGCCCCGCTCCCTCCTCCCGGGAAAACTAGCCGTAGATTTTATTCAAAAAAGGTTTCACCAAAAGTCCCAACTGGCAGTTATAACATAGCCCATATAAGTTATGAATTAAATGTCTTAGGCACACGAGGACCCCGGAGAATGCACTGTATAATGCATTCAATACCAGTGTCTTCTCTTGATGCCGGTGGCACTGTTCCAGGCCAACCCGAGCTCCTCCCTCCCAACTCCCTCGATGACTCATTCCGGAGTGCATCCTTCTCCAAAGCCATAGATCATTCCATGGAGTTCAGTAGTGCTAGATTTTCCGAAATTGGGAGAGCCGCATTGGATGGTGACGAGGAGGGAAAGATGAGACCTTTGGTTCTCAAAAACAAGCCCCCAAGATGGCACGAACAACTGCAATGTTGGTGTCTCAACTTTCGTGGGCGAGTAACTGTTGCATCAGTGAAGAACTTTCAGTTGATTGCAGCAATACAACCAGCTGCTGGCGCTCCAACCCCATCTCAACCAGGCCCACCTGAGCATGACAAGATCATTCTTCAATTCGGGAAAGTTGGTAAAGACATGTTCACGATGGATTATCGATATCCGCTGTCTGCTTTTCAGGCCTTTGCTATATGCTTGAGCAGCTTTGATACCAAATTGGCTTGTGAATAA 1287 45.77 MSFRSIVRDVRDSIGSLSRRGFEVKLSGHHRGKSNASSLNDLHDQPPVVQNGCWASLPPELLYDVIRRLEESENTWPSRKNVVACAAVCRSWRIMCMEIVKGPEICGKLTFPVSLKQPGPRDGSVQCFIKRDKSNLTYHLYLCLSPALLVENGKFLLSAKRTRRTTSTEYIISMDAENISRSSSSYIGKLRSNFLGTKFIVYDTQPPYTAAPLPPPGKTSRRFYSKKVSPKVPTGSYNIAHISYELNVLGTRGPRRMHCIMHSIPVSSLDAGGTVPGQPELLPPNSLDDSFRSASFSKAIDHSMEFSSARFSEIGRAALDGDEEGKMRPLVLKNKPPRWHEQLQCWCLNFRGRVTVASVKNFQLIAAIQPAAGAPTPSQPGPPEHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE* 429
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 14425098 14429008 - CsaV3_3G018710.1 Csa03g01871 522776
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g01871 428 PRINTS Tubby superfamily signature 170 186 IPR000007 -
Csa03g01871 428 PRINTS Tubby superfamily signature 186 210 IPR000007 -
Csa03g01871 428 PRINTS Tubby superfamily signature 236 263 IPR000007 -
Csa03g01871 428 PRINTS Tubby superfamily signature 332 349 IPR000007 -
Csa03g01871 428 PRINTS Tubby superfamily signature 350 366 IPR000007 -
Csa03g01871 428 PRINTS Tubby superfamily signature 385 404 IPR000007 -
Csa03g01871 428 PRINTS Tubby superfamily signature 406 428 IPR000007 -
Csa03g01871 428 PANTHER TUBBY-RELATED 1 428 - -
Csa03g01871 428 SUPERFAMILY F-box domain 45 97 IPR036047 GO:0005515
Csa03g01871 428 ProSitePatterns Tub family signature 1. 350 363 IPR018066 -
Csa03g01871 428 PANTHER TUBBY-LIKE F-BOX PROTEIN 10-RELATED 1 428 - -
Csa03g01871 428 Pfam Tub family 115 423 IPR000007 -
Csa03g01871 428 ProSitePatterns Tub family signature 2. 413 428 IPR018066 -
Csa03g01871 428 SUPERFAMILY Tubby C-terminal domain-like 103 428 IPR025659 -
Csa03g01871 428 Pfam F-box domain 54 100 IPR001810 GO:0005515
Csa03g01871 428 Gene3D - 49 101 - -
Csa03g01871 428 Gene3D Tubby Protein; Chain A 113 422 IPR025659 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g01411 Csa-Chr3:10605878 Csa03g01871 Csa-Chr3:14425098 1.34E-151 dispersed
Csa03g01871 Csa-Chr3:14425098 Csa06g00404 Csa-Chr6:3531561 0 dispersed
Csa03g01871 Csa-Chr3:14425098 Csa04g00567 Csa-Chr4:3753112 2.00E-155 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31239 PF01167 Tub 8.10E-117 CL0395 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g01871 K19600 - csv:101216314 868.611