Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g01879 ATGGAGATTGATCTATCACTCAAAATAGATCATCACAAGGAAGAGCATCATCATCATCATTTGATCAAACACCAAAAGAATGATCAACAACAACGTCAAGATGATCATGATCGTGAAGAAGAAGGAGAAGGAGAAGGAGAGGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAATTGATATTGATCATCACGTTGTTCCTTCGACTACTTCTGGCTTAAAAGTGTTTTTGCCACATAACAATACTAATGTAGGAGAGATTTCAGAGTTACAAATGGAAATGGATCGAATCAAAGAAGAGAATAAGGCGTTGAGAAAAGCTGTGGAACAGACAATGAAAGATTATTATGATCTTGAAATGAAAATTGGTTTCTTTCAACAAAACAATAACCTCAACAACAAGCTGGAGTGTGATCATAACTTCCTATCATTCCATGGAAATGAGAACAAAAGGCACGAAGAACTAACAAAACACGACCTCGAACTCGGAGAAATGGCAAAGAAGAAGAGACGAGTTGGGTCGGCATCGAAGGAAGACGAAATGAGGGAGAGTGAACTGGGGTTATCATTAGGGCTCCATACAAAAAACAGTAATGATGATTTGGAACAAGAAGATAATGATAGGGAATTATTAATAGAAGAAGAAAGAAGAGAAATTAAGAACAAGGAAAATTCAATAATAATGTCAAATTTCAATTCAATCCAAAACAAACCACAAAGGCCTGAATTGCAAGCAATGGCACCCCCACAAAACAGAAAAGCTAGGGTTTCTGTAAGAGCAAGATGTGAATCTGCTACTATGAATGATGGTTGCCAATGGAGAAAATATGGTCAAAAAATTGCAAAGGGAAATCCATGCCCTCGAGCATATTATCGTTGCACTGTTGCACCGGGTTGCCCAGTTAGAAAACAGGTACAAAGATGCTTAGAAGACATGTCAATTCTAATAACAACATACGAAGGAACACATAATCATCCTCTCCCTGTTGGAGCAACAGCCATGGCTTCCACAGCTTCAGCAGCTTCTGCTTCCTTTATGCTCTTAGACTCATCTAATACTAATAATACCAATCTTTCTAATTCTCTTCATCTAAACCCTAATATTCTTAACTCTTCTTCTCCTTCTTTCCTCCAAACTCAAAACCCTACTAACCATCTTTTCACCCCATTATTCCCCACCTCCTCAACCTCCCACTTCCCCCATTCCTTTTACCATTCCAACTTTCAACCTAATCATCTTGTTGGTCCTCTCGACCGTCGCACGTGGAAACCGACCGATGATAATAAGCCACCACCGTTCACGCCCGATGCCGTGTCTGCCATTGCTTCTGACCCTAAGTTTCGAGTTGCCGTTGCGGCCGCTATTTCTTCGCTCATTAACAAAGAGAATGAACACATGACGACATCGATGACGGGAGAGACGGTCACAGATGGTAAAGGCGGTGGTGGCAGCGATAGTGATAGTGGAAACAAGAAATGGGTTGTTGAATCCCTCTCCTCAAAATCAAATGGTAATTGA 1521 40.3 MEIDLSLKIDHHKEEHHHHHLIKHQKNDQQQRQDDHDREEEGEGEGEEEEEEEEEEEEEIDIDHHVVPSTTSGLKVFLPHNNTNVGEISELQMEMDRIKEENKALRKAVEQTMKDYYDLEMKIGFFQQNNNLNNKLECDHNFLSFHGNENKRHEELTKHDLELGEMAKKKRRVGSASKEDEMRESELGLSLGLHTKNSNDDLEQEDNDRELLIEEERREIKNKENSIIMSNFNSIQNKPQRPELQAMAPPQNRKARVSVRARCESATMNDGCQWRKYGQKIAKGNPCPRAYYRCTVAPGCPVRKQVQRCLEDMSILITTYEGTHNHPLPVGATAMASTASAASASFMLLDSSNTNNTNLSNSLHLNPNILNSSSPSFLQTQNPTNHLFTPLFPTSSTSHFPHSFYHSNFQPNHLVGPLDRRTWKPTDDNKPPPFTPDAVSAIASDPKFRVAVAAAISSLINKENEHMTTSMTGETVTDGKGGGGSDSDSGNKKWVVESLSSKSNGN* 507
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 14489815 14493411 - CsaV3_3G018790.1 Csa03g01879 522784
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g01879 506 MobiDBLite consensus disorder prediction 40 61 - -
Csa03g01879 506 Coils Coil 88 115 - -
Csa03g01879 506 ProSiteProfiles WRKY domain profile. 263 329 IPR003657 GO:0003700|GO:0006355|GO:0043565
Csa03g01879 506 MobiDBLite consensus disorder prediction 464 506 - -
Csa03g01879 506 Gene3D WRKY domain 253 330 IPR036576 GO:0003700|GO:0006355|GO:0043565
Csa03g01879 506 Coils Coil 199 219 - -
Csa03g01879 506 SMART WRKY_cls 268 328 IPR003657 GO:0003700|GO:0006355|GO:0043565
Csa03g01879 506 MobiDBLite consensus disorder prediction 491 506 - -
Csa03g01879 506 MobiDBLite consensus disorder prediction 233 253 - -
Csa03g01879 506 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 2 500 IPR044810 GO:0003700
Csa03g01879 506 PANTHER WRKY TRANSCRIPTION FACTOR 9-RELATED 2 500 - -
Csa03g01879 506 SUPERFAMILY WRKY DNA-binding domain 261 329 IPR036576 GO:0003700|GO:0006355|GO:0043565
Csa03g01879 506 Coils Coil 39 59 - -
Csa03g01879 506 MobiDBLite consensus disorder prediction 166 187 - -
Csa03g01879 506 Pfam WRKY DNA -binding domain 269 327 IPR003657 GO:0003700|GO:0006355|GO:0043565
Csa03g01879 506 MobiDBLite consensus disorder prediction 166 207 - -
Csa03g01879 506 MobiDBLite consensus disorder prediction 1 61 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g01879 Csa-Chr3:14489815 Csa06g03497 Csa-Chr6:28610615 7.65E-39 dispersed
Csa03g01879 Csa-Chr3:14489815 Csa07g00347 Csa-Chr7:2571163 8.13E-52 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31240 PF03106 WRKY 2.10E-24 CL0274 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g01879 - - cmo:103496139 756.518