Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Csa03g01916 | ATGGAGATGAATCTCCCCAACGGGTTTGGAGCAGCCGAGAAAAATAATGGCGAAGAGAAGAAGAGGGAAGACCAGAAGCAAGGAAGCGAAGATGACAACAACGACAGCGATAGTGATAGCGACATGCCGTCGTCGTTGAGCCTTAGAGAACTTTCCAAGGTTATACTTCCACCTTTGGGAGTTTCAAGCTTCACTGATGGCAGTAATAGAGTTAAGTCTAATAGATGGATCATCTCTCCCATGAGCTCAAGATACAGGTGGTGGCAGTCGTTCATGGTTGTTTTGGTTTCTTACTCGGTGTGGGTTTACCCATTGGAAGTGGCGTTTCTGGACGCAATTCCCAGGCGAAAATTATTAATTGTTGATACTGTTGTCGATCTCTTCTTCGCCATTGATATTGTCTTCACCTTCTTCGTTTCTTACATTGACCATCGCACTCAGCTTCTCGTTCGTGATTCTAAGAAGATAGCTATCAGGTACTTGTCCACATGGTTCTTGATGGATTTGGCATCAACAATCCCATTTGATACACTGGCCTATCTGTCCACAGGCAAATATGATCTTTGTCTCCCTTTTGCCCTCCTAGGATTGCTAAGATTTTGGCGATTGCGACGTGTCAAGCAATTTTTTACCAGGCTTGAAAAGGACATTAGATTCAGCTACTTTTGGGTTAGATGTGCTAGGCTCCTATCTGTCACTTTATTTTATGTCCACTGTGCCGGATGCGTCTACTACTTATTGGCTGACCGATATCCACATGAAGGGAAAACCTGGATTGGAACCTTATTTCCAAATTTCAAAGAGATTAGCTTTGGAGTGAGATATACTTCAGCCATGTATTGGTCTATCACCACAATGACAACTGTTGGTTATGGTGATCTTCATGCTGTGAACACCGTGGAAATGATCTTTATCATTTTCTACATGCTCTTCAATCTGGGGCTTACTGCTTACTTGATCGGTAACATGACAAACTTAGTTGTTGAAGGAACTCGCCGCACAATGGAATTTAGAAACAGCATTGAAATGGCATCGAACTTTGTTAACCGGAATCGCCTGCCTTCGAGGTTGAAGGAACACATATTGGCATACATGTGCTTGAGATTCAAGGCTGAGAGCCTAAACCAACAGCATCTGATTGAACAGCTTCCAAAGTCAATTTGCAAAAGCATATGTCAGCAATTGTTTTTGCCGACCGTGGAGAAAGTCTACCTCTTCAAGGGTGTTTCAAAGGAAACACTTGTGGTGCTGGTAGCGAAGATGAAAGCCGAGTATATACCGCCTAAGGAGGACGTGATAATACAAAATGACACTCCTGATGAAGTTTATATCATTGTGTCTGGGGAAATTGAAATTATTGACTGTGAGATGGATGTGGAACGGATTGTTGGGACGCTACACTGTGGCAGTATGTTTGGGGAAGTAGGAGCACTTTGTTGCAAAAACCAAAGTTTTACATACAGAACCAGAACTCTTTCACAGCTCTTGAAGCTGAAAACAAGTGTATTACAGGAAGCTATGAATTTCAAACAAGAAGACAGTATGGTCATTGTCAAGAACTTCCTTCAGGAGCGTGAGCTCAGCCACAAAATCACCATAGAAGGCTCACCCGAAAAAGAGGTGCCGACGCTGATCGAAGAAAAGGATCAAAGTTTCAACTGGAAACACTCCATTGAATTAGATTTTGCTAGAGTGAACATATACAAAGGCCATCCAGTAGCCAGAAAACAGGCTTCTTGTGATGATCCTGGAAAGCTGATCAGATTGCCACATTCAATGGAGGAGCTCAAAAAACTTGCAGGTGAAAAGTTTGGATTTGATGCAAGAAATGCTGTTTTGACAAATGAAGAAGGCTCTGAAATTGATTCTATTGATGTGATAAGGGATAATGATAAGATTTATTTTTCATAG | 1911 | 42.07 | MEMNLPNGFGAAEKNNGEEKKREDQKQGSEDDNNDSDSDSDMPSSLSLRELSKVILPPLGVSSFTDGSNRVKSNRWIISPMSSRYRWWQSFMVVLVSYSVWVYPLEVAFLDAIPRRKLLIVDTVVDLFFAIDIVFTFFVSYIDHRTQLLVRDSKKIAIRYLSTWFLMDLASTIPFDTLAYLSTGKYDLCLPFALLGLLRFWRLRRVKQFFTRLEKDIRFSYFWVRCARLLSVTLFYVHCAGCVYYLLADRYPHEGKTWIGTLFPNFKEISFGVRYTSAMYWSITTMTTVGYGDLHAVNTVEMIFIIFYMLFNLGLTAYLIGNMTNLVVEGTRRTMEFRNSIEMASNFVNRNRLPSRLKEHILAYMCLRFKAESLNQQHLIEQLPKSICKSICQQLFLPTVEKVYLFKGVSKETLVVLVAKMKAEYIPPKEDVIIQNDTPDEVYIIVSGEIEIIDCEMDVERIVGTLHCGSMFGEVGALCCKNQSFTYRTRTLSQLLKLKTSVLQEAMNFKQEDSMVIVKNFLQERELSHKITIEGSPEKEVPTLIEEKDQSFNWKHSIELDFARVNIYKGHPVARKQASCDDPGKLIRLPHSMEELKKLAGEKFGFDARNAVLTNEEGSEIDSIDVIRDNDKIYFS* | 637 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 14901189 | 14907984 | + | CsaV3_3G019160.1 | Csa03g01916 | 522821 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Csa03g01916 | 636 | PRINTS | EAG/ELK/ERG potassium channel family signature | 122 | 132 | IPR003938 | GO:0005249|GO:0006813|GO:0016020 | |
| Csa03g01916 | 636 | PRINTS | EAG/ELK/ERG potassium channel family signature | 133 | 142 | IPR003938 | GO:0005249|GO:0006813|GO:0016020 | |
| Csa03g01916 | 636 | PRINTS | EAG/ELK/ERG potassium channel family signature | 275 | 292 | IPR003938 | GO:0005249|GO:0006813|GO:0016020 | |
| Csa03g01916 | 636 | PRINTS | EAG/ELK/ERG potassium channel family signature | 301 | 312 | IPR003938 | GO:0005249|GO:0006813|GO:0016020 | |
| Csa03g01916 | 636 | PRINTS | EAG/ELK/ERG potassium channel family signature | 319 | 328 | IPR003938 | GO:0005249|GO:0006813|GO:0016020 | |
| Csa03g01916 | 636 | Pfam | KHA, dimerisation domain of potassium ion channel | 564 | 635 | IPR021789 | - | |
| Csa03g01916 | 636 | Gene3D | - | 87 | 328 | - | - | |
| Csa03g01916 | 636 | CDD | CAP_ED | 405 | 507 | IPR000595 | - | |
| Csa03g01916 | 636 | ProSiteProfiles | KHA domain profile. | 564 | 636 | IPR021789 | - | |
| Csa03g01916 | 636 | Pfam | Cyclic nucleotide-binding domain | 426 | 507 | IPR000595 | - | |
| Csa03g01916 | 636 | ProSiteProfiles | cAMP/cGMP binding motif profile. | 405 | 524 | IPR000595 | - | |
| Csa03g01916 | 636 | PANTHER | POTASSIUM CHANNEL AKT2/3 | 559 | 635 | - | - | |
| Csa03g01916 | 636 | PANTHER | POTASSIUM CHANNEL AKT2/3 | 50 | 531 | - | - | |
| Csa03g01916 | 636 | Gene3D | Jelly Rolls | 372 | 540 | IPR014710 | - | |
| Csa03g01916 | 636 | Pfam | Ion transport protein | 85 | 334 | IPR005821 | GO:0005216|GO:0006811|GO:0016020|GO:0055085 | |
| Csa03g01916 | 636 | PANTHER | POTASSIUM CHANNEL AKT1 | 50 | 531 | IPR045319 | GO:0005249|GO:0006813 | |
| Csa03g01916 | 636 | PANTHER | POTASSIUM CHANNEL AKT1 | 559 | 635 | IPR045319 | GO:0005249|GO:0006813 | |
| Csa03g01916 | 636 | SUPERFAMILY | cAMP-binding domain-like | 332 | 522 | IPR018490 | - | |
| Csa03g01916 | 636 | SUPERFAMILY | Voltage-gated potassium channels | 80 | 328 | - | - | |
| Csa03g01916 | 636 | MobiDBLite | consensus disorder prediction | 14 | 33 | - | - | |
| Csa03g01916 | 636 | MobiDBLite | consensus disorder prediction | 1 | 44 | - | - | |
| Csa03g01916 | 636 | SMART | cnmp_10 | 405 | 522 | IPR000595 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Csa03g01916 | Csa-Chr3:14901189 | Csa03g04376 | Csa-Chr3:38197021 | 2.23E-155 | dispersed | |
| Csa03g01916 | Csa-Chr3:14901189 | Csa03g00811 | Csa-Chr3:6975043 | 8.93E-18 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Csa03g01916 | K21867 | - | csv:101205212 | 1254.97 |