Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa03g01924 | ATGGCTTCTCGTTTCTGGACCCAGGGTGGTGGTAGTGGTTCTGATTCTGAAGCGGAGGAGAGTGACTATGGTGAAGAGCTTGATGACATTCAGGTTGATTCCAACGACCAACCGAACAGAAGCAGATATCTGCAAGGGAATGCCAGTGATAGTGAAGATTCTGAAGATAAGAAGCGTACTGTTAGGTCGGCTAAAGATAAGCGTTTTGAGGAGATGTCTGCTACTGTCGATCAGATGAAAAATGCTATGAAGATCAATGATTGGGTAAGCCTGCAGGAGAGTTTTGATAAAATAAATAAGCAGCTTGAGAAAGTCATGCGTGTTACTGAGTCTGAGAAGGTGCCGACTCTTTATATTAAAGCACTTGTGATGCTAGAGGATTTCTTAAATGAAGCTATGGCTAATAAGGAAGCTAAGAAGAAAATGAGTACTAGTAATTCTAAGGCACTGAATTCAATGAAGCAGAAGCTAAAGAAGAACAATAAGCAATATGAAGAGGTAATTACCAAGTATAGAGAAAATCCTGAGGTTGAGGAAGAAAAGGCTGATGAGATGGATGATGATGATGATGATGATGATGAAGGATCTGAATATGAGGATGATCCTTCTAAAATTATGTCTGATTCAGAGCCAGAGCCAGATATAGACGAGGAAGAAGATCTAGATGATCCAAGTCAAAACTGGGAGAAAAAGAAGAGCAAAAAAAACAAGCTCATGGATAAGCAGTTTATGAAGGATCCTAGTGAGATCACATGGGACACTGTCAACAAAAAGTTTAAGGAAGTTGTGGCTGCTCGAGGTAGGAAGGGAACTGGTAGATTTGAGCAGGTTGAACAGCTTACATTCTTAACAAAAGTTGCTAAGACTCCTGCACAAAAGCTTGAGATTTTGTTCAGTGTTGTATCTGCTCAATTTGACGTGAATCCAGGTCTCAGTGGGCATATGCCTATCAGTGTGTGGAAGAAGTGTGTGCAAAACATGCTTTCTATAATTGACATTCTTGTGCAGAATCCCAACATTGTAGTGGATGATATGGTAGAACCAGATGAGAATGAAAGCCAGAAGCCAGCTGACTATAAGGGAACAATTCGTGTTTGGGGAAACTTGGTTGCTTTTGTTGAGCGGATTGACACTGAGTTTTTTAAGAGTTTGCAGTGTATTGATCCACATACGCGTGAGTATGTTGAAAGGCTCAGAGATGAGCCAATGTTTATGGTTCTTGCTCAGAATGTCCAAGGATATTTGGAACGAGTTGGGGATTACAAAGCGGCTTCAAAAGTTGCCTTGAGGCGTGTTGAACTGATTTATTACAAACCACAAGAGGTTTATGATGCCATGAGAAAGCTTGCAGAGCTGTCGGAAGATGATGGTGGAGATGCAAGTGATGAGGCTAAAGTGGTTGAGGAGAGTAGGGGCCCTGCTGCATTTATTGTCACTCCAGAGCTTGTACCTCGTAAACCCACCTTTCCAGAGAGTAGTAGGGCTTTTATGGACATTCTGGTAACCCTCATATACCAGTATGGAGATGAGCGCACTAAAGCACGAGCTATGCTTTGTGATATTTACCACCATGCTCTCTTAGATGAATTTTATATTTCTCGTGACTTGTTGCTGATGAGTCACTTACAGGATAGTATTCAACACTTGGACATCTCAACACAGATCCTTTTCAATAGGGCAATGGCTCAACTTGGTTTGTGTGGCTTTCGGGTTGGTCTGATCAGTGAAGGACATGGCTGTGTTTCAGAATTATATTCAGGTGGAAGGGTGAAGGAATTGCTTGCACAAGGTGTCTCACAAAGCCGATACCATGAGAAGACTCCAGAACAGGAAAGGCTTGAAAGAAGAAGGCAGATGCCATACCACATGCACATAAATCTTGAGCTTCTTGAGGCAGTGCATTTAATAAGTGCTATGCTGCTGGAAGTACCCAACATGGCAGGCAATGTTCACGATTCAAAGCGTAAAGTTATCAGTAAGAACTTTAGACGGTTACTAGAGGTGAGTGAGAGACAGACATTTACGGGTCCTCCTGAGAATGTCAGAGATCATGTAATGGCTGCTACCAGGGCACTTCGTAAGGGTGATTTCCAGAAGGCTTATGACGTCATTGCATCTTTAGATGTATGGAAGTTACTCAGGAGGTGTAATGAAGTGCTGGAAATGGTTAAAGGAAAGATCAAGGAGGAGGCTCTGAGGACTTACCTTCTCACGTACTCCTCATCCTACGATTCTCTGAGTTCGGACCAACTCACCCAAATGTTTGACCTTGCAGAGGGTCAAACACATAGTATCGTGAGCAAGATGATGATTAATGAGGAGCTCCATGCAAGTTGGGATCAGCCAAGTGGGTGCATCATCTTTCACGATGTTACTCACACCCGGTTACAAGGTCTGGCATTCCAATTGGCTGATAAGTTGTCAATCCTTGCTGAAAGTAATGAGAGAGCAGTTGAGGCAAGAATTGGAGGAGGATTAGATTTACCAATGAGGCGAAGGGACAACCAAGAATATGGTGCTGGAGGAGCTGCAGGTGGGAGTAGCAGGTGGCCAGATAACATGTCTTATAATCAAGGAAGGCAAGGCGGTCCTAGTTCGCGTGCAGGATACAGCAGTGGTGGGCGAGGCCAAGGTGGGGGTGGTGGATACTATAGAGATAGGATGGGCCAGTCTCGAGGAGGCAATTCAGGATACCAAAGCACCCGTTATCAAGATGCTGCATATGGGTCGGGGAGAACTGCTTATCAGTCGGGATCTTCCAGAGGATCCCAGATGGATGCTTCTGCTCGAATGGTCAGTCTCAACAAAGGTGTTCATGCTTAA | 2823 | 43.78 | MASRFWTQGGGSGSDSEAEESDYGEELDDIQVDSNDQPNRSRYLQGNASDSEDSEDKKRTVRSAKDKRFEEMSATVDQMKNAMKINDWVSLQESFDKINKQLEKVMRVTESEKVPTLYIKALVMLEDFLNEAMANKEAKKKMSTSNSKALNSMKQKLKKNNKQYEEVITKYRENPEVEEEKADEMDDDDDDDDEGSEYEDDPSKIMSDSEPEPDIDEEEDLDDPSQNWEKKKSKKNKLMDKQFMKDPSEITWDTVNKKFKEVVAARGRKGTGRFEQVEQLTFLTKVAKTPAQKLEILFSVVSAQFDVNPGLSGHMPISVWKKCVQNMLSIIDILVQNPNIVVDDMVEPDENESQKPADYKGTIRVWGNLVAFVERIDTEFFKSLQCIDPHTREYVERLRDEPMFMVLAQNVQGYLERVGDYKAASKVALRRVELIYYKPQEVYDAMRKLAELSEDDGGDASDEAKVVEESRGPAAFIVTPELVPRKPTFPESSRAFMDILVTLIYQYGDERTKARAMLCDIYHHALLDEFYISRDLLLMSHLQDSIQHLDISTQILFNRAMAQLGLCGFRVGLISEGHGCVSELYSGGRVKELLAQGVSQSRYHEKTPEQERLERRRQMPYHMHINLELLEAVHLISAMLLEVPNMAGNVHDSKRKVISKNFRRLLEVSERQTFTGPPENVRDHVMAATRALRKGDFQKAYDVIASLDVWKLLRRCNEVLEMVKGKIKEEALRTYLLTYSSSYDSLSSDQLTQMFDLAEGQTHSIVSKMMINEELHASWDQPSGCIIFHDVTHTRLQGLAFQLADKLSILAESNERAVEARIGGGLDLPMRRRDNQEYGAGGAAGGSSRWPDNMSYNQGRQGGPSSRAGYSSGGRGQGGGGGYYRDRMGQSRGGNSGYQSTRYQDAAYGSGRTAYQSGSSRGSQMDASARMVSLNKGVHA* | 941 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 15023840 | 15029013 | + | CsaV3_3G019240.1 | Csa03g01924 | 522829 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa03g01924 | 940 | MobiDBLite | consensus disorder prediction | 850 | 872 | - | - | |
Csa03g01924 | 940 | MobiDBLite | consensus disorder prediction | 179 | 199 | - | - | |
Csa03g01924 | 940 | Pfam | PCI domain | 661 | 789 | IPR000717 | - | |
Csa03g01924 | 940 | MobiDBLite | consensus disorder prediction | 892 | 930 | - | - | |
Csa03g01924 | 940 | MobiDBLite | consensus disorder prediction | 1 | 15 | - | - | |
Csa03g01924 | 940 | Hamap | Eukaryotic translation initiation factor 3 subunit C [EIF3C]. | 2 | 863 | IPR027516 | GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369 | |
Csa03g01924 | 940 | MobiDBLite | consensus disorder prediction | 1 | 69 | - | - | |
Csa03g01924 | 940 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT C | 1 | 939 | - | - | |
Csa03g01924 | 940 | MobiDBLite | consensus disorder prediction | 158 | 178 | - | - | |
Csa03g01924 | 940 | MobiDBLite | consensus disorder prediction | 139 | 236 | - | - | |
Csa03g01924 | 940 | ProSiteProfiles | PCI domain profile. | 621 | 793 | IPR000717 | - | |
Csa03g01924 | 940 | Coils | Coil | 147 | 174 | - | - | |
Csa03g01924 | 940 | SMART | motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 | 722 | 810 | - | - | |
Csa03g01924 | 940 | MobiDBLite | consensus disorder prediction | 49 | 69 | - | - | |
Csa03g01924 | 940 | PANTHER | EUKARYOTIC TRANSLATION INITATION FACTOR 3, SUBUNIT 8 EIF3S8 -RELATED | 1 | 939 | IPR027516 | GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369 | |
Csa03g01924 | 940 | MobiDBLite | consensus disorder prediction | 827 | 940 | - | - | |
Csa03g01924 | 940 | MobiDBLite | consensus disorder prediction | 34 | 48 | - | - | |
Csa03g01924 | 940 | Pfam | Eukaryotic translation initiation factor 3 subunit 8 N-terminus | 48 | 652 | IPR008905 | GO:0003743|GO:0005852|GO:0006413|GO:0031369 | |
Csa03g01924 | 940 | MobiDBLite | consensus disorder prediction | 18 | 32 | - | - | |
Csa03g01924 | 940 | SMART | PINT_4 | 722 | 810 | IPR000717 | - | |
Csa03g01924 | 940 | SUPERFAMILY | Winged helix DNA-binding domain | 723 | 792 | IPR036390 | - |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa03g01924 | K03252 | - | csv:101203990 | 1703.72 |