Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g01924 ATGGCTTCTCGTTTCTGGACCCAGGGTGGTGGTAGTGGTTCTGATTCTGAAGCGGAGGAGAGTGACTATGGTGAAGAGCTTGATGACATTCAGGTTGATTCCAACGACCAACCGAACAGAAGCAGATATCTGCAAGGGAATGCCAGTGATAGTGAAGATTCTGAAGATAAGAAGCGTACTGTTAGGTCGGCTAAAGATAAGCGTTTTGAGGAGATGTCTGCTACTGTCGATCAGATGAAAAATGCTATGAAGATCAATGATTGGGTAAGCCTGCAGGAGAGTTTTGATAAAATAAATAAGCAGCTTGAGAAAGTCATGCGTGTTACTGAGTCTGAGAAGGTGCCGACTCTTTATATTAAAGCACTTGTGATGCTAGAGGATTTCTTAAATGAAGCTATGGCTAATAAGGAAGCTAAGAAGAAAATGAGTACTAGTAATTCTAAGGCACTGAATTCAATGAAGCAGAAGCTAAAGAAGAACAATAAGCAATATGAAGAGGTAATTACCAAGTATAGAGAAAATCCTGAGGTTGAGGAAGAAAAGGCTGATGAGATGGATGATGATGATGATGATGATGATGAAGGATCTGAATATGAGGATGATCCTTCTAAAATTATGTCTGATTCAGAGCCAGAGCCAGATATAGACGAGGAAGAAGATCTAGATGATCCAAGTCAAAACTGGGAGAAAAAGAAGAGCAAAAAAAACAAGCTCATGGATAAGCAGTTTATGAAGGATCCTAGTGAGATCACATGGGACACTGTCAACAAAAAGTTTAAGGAAGTTGTGGCTGCTCGAGGTAGGAAGGGAACTGGTAGATTTGAGCAGGTTGAACAGCTTACATTCTTAACAAAAGTTGCTAAGACTCCTGCACAAAAGCTTGAGATTTTGTTCAGTGTTGTATCTGCTCAATTTGACGTGAATCCAGGTCTCAGTGGGCATATGCCTATCAGTGTGTGGAAGAAGTGTGTGCAAAACATGCTTTCTATAATTGACATTCTTGTGCAGAATCCCAACATTGTAGTGGATGATATGGTAGAACCAGATGAGAATGAAAGCCAGAAGCCAGCTGACTATAAGGGAACAATTCGTGTTTGGGGAAACTTGGTTGCTTTTGTTGAGCGGATTGACACTGAGTTTTTTAAGAGTTTGCAGTGTATTGATCCACATACGCGTGAGTATGTTGAAAGGCTCAGAGATGAGCCAATGTTTATGGTTCTTGCTCAGAATGTCCAAGGATATTTGGAACGAGTTGGGGATTACAAAGCGGCTTCAAAAGTTGCCTTGAGGCGTGTTGAACTGATTTATTACAAACCACAAGAGGTTTATGATGCCATGAGAAAGCTTGCAGAGCTGTCGGAAGATGATGGTGGAGATGCAAGTGATGAGGCTAAAGTGGTTGAGGAGAGTAGGGGCCCTGCTGCATTTATTGTCACTCCAGAGCTTGTACCTCGTAAACCCACCTTTCCAGAGAGTAGTAGGGCTTTTATGGACATTCTGGTAACCCTCATATACCAGTATGGAGATGAGCGCACTAAAGCACGAGCTATGCTTTGTGATATTTACCACCATGCTCTCTTAGATGAATTTTATATTTCTCGTGACTTGTTGCTGATGAGTCACTTACAGGATAGTATTCAACACTTGGACATCTCAACACAGATCCTTTTCAATAGGGCAATGGCTCAACTTGGTTTGTGTGGCTTTCGGGTTGGTCTGATCAGTGAAGGACATGGCTGTGTTTCAGAATTATATTCAGGTGGAAGGGTGAAGGAATTGCTTGCACAAGGTGTCTCACAAAGCCGATACCATGAGAAGACTCCAGAACAGGAAAGGCTTGAAAGAAGAAGGCAGATGCCATACCACATGCACATAAATCTTGAGCTTCTTGAGGCAGTGCATTTAATAAGTGCTATGCTGCTGGAAGTACCCAACATGGCAGGCAATGTTCACGATTCAAAGCGTAAAGTTATCAGTAAGAACTTTAGACGGTTACTAGAGGTGAGTGAGAGACAGACATTTACGGGTCCTCCTGAGAATGTCAGAGATCATGTAATGGCTGCTACCAGGGCACTTCGTAAGGGTGATTTCCAGAAGGCTTATGACGTCATTGCATCTTTAGATGTATGGAAGTTACTCAGGAGGTGTAATGAAGTGCTGGAAATGGTTAAAGGAAAGATCAAGGAGGAGGCTCTGAGGACTTACCTTCTCACGTACTCCTCATCCTACGATTCTCTGAGTTCGGACCAACTCACCCAAATGTTTGACCTTGCAGAGGGTCAAACACATAGTATCGTGAGCAAGATGATGATTAATGAGGAGCTCCATGCAAGTTGGGATCAGCCAAGTGGGTGCATCATCTTTCACGATGTTACTCACACCCGGTTACAAGGTCTGGCATTCCAATTGGCTGATAAGTTGTCAATCCTTGCTGAAAGTAATGAGAGAGCAGTTGAGGCAAGAATTGGAGGAGGATTAGATTTACCAATGAGGCGAAGGGACAACCAAGAATATGGTGCTGGAGGAGCTGCAGGTGGGAGTAGCAGGTGGCCAGATAACATGTCTTATAATCAAGGAAGGCAAGGCGGTCCTAGTTCGCGTGCAGGATACAGCAGTGGTGGGCGAGGCCAAGGTGGGGGTGGTGGATACTATAGAGATAGGATGGGCCAGTCTCGAGGAGGCAATTCAGGATACCAAAGCACCCGTTATCAAGATGCTGCATATGGGTCGGGGAGAACTGCTTATCAGTCGGGATCTTCCAGAGGATCCCAGATGGATGCTTCTGCTCGAATGGTCAGTCTCAACAAAGGTGTTCATGCTTAA 2823 43.78 MASRFWTQGGGSGSDSEAEESDYGEELDDIQVDSNDQPNRSRYLQGNASDSEDSEDKKRTVRSAKDKRFEEMSATVDQMKNAMKINDWVSLQESFDKINKQLEKVMRVTESEKVPTLYIKALVMLEDFLNEAMANKEAKKKMSTSNSKALNSMKQKLKKNNKQYEEVITKYRENPEVEEEKADEMDDDDDDDDEGSEYEDDPSKIMSDSEPEPDIDEEEDLDDPSQNWEKKKSKKNKLMDKQFMKDPSEITWDTVNKKFKEVVAARGRKGTGRFEQVEQLTFLTKVAKTPAQKLEILFSVVSAQFDVNPGLSGHMPISVWKKCVQNMLSIIDILVQNPNIVVDDMVEPDENESQKPADYKGTIRVWGNLVAFVERIDTEFFKSLQCIDPHTREYVERLRDEPMFMVLAQNVQGYLERVGDYKAASKVALRRVELIYYKPQEVYDAMRKLAELSEDDGGDASDEAKVVEESRGPAAFIVTPELVPRKPTFPESSRAFMDILVTLIYQYGDERTKARAMLCDIYHHALLDEFYISRDLLLMSHLQDSIQHLDISTQILFNRAMAQLGLCGFRVGLISEGHGCVSELYSGGRVKELLAQGVSQSRYHEKTPEQERLERRRQMPYHMHINLELLEAVHLISAMLLEVPNMAGNVHDSKRKVISKNFRRLLEVSERQTFTGPPENVRDHVMAATRALRKGDFQKAYDVIASLDVWKLLRRCNEVLEMVKGKIKEEALRTYLLTYSSSYDSLSSDQLTQMFDLAEGQTHSIVSKMMINEELHASWDQPSGCIIFHDVTHTRLQGLAFQLADKLSILAESNERAVEARIGGGLDLPMRRRDNQEYGAGGAAGGSSRWPDNMSYNQGRQGGPSSRAGYSSGGRGQGGGGGYYRDRMGQSRGGNSGYQSTRYQDAAYGSGRTAYQSGSSRGSQMDASARMVSLNKGVHA* 941
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 15023840 15029013 + CsaV3_3G019240.1 Csa03g01924 522829
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g01924 940 MobiDBLite consensus disorder prediction 850 872 - -
Csa03g01924 940 MobiDBLite consensus disorder prediction 179 199 - -
Csa03g01924 940 Pfam PCI domain 661 789 IPR000717 -
Csa03g01924 940 MobiDBLite consensus disorder prediction 892 930 - -
Csa03g01924 940 MobiDBLite consensus disorder prediction 1 15 - -
Csa03g01924 940 Hamap Eukaryotic translation initiation factor 3 subunit C [EIF3C]. 2 863 IPR027516 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Csa03g01924 940 MobiDBLite consensus disorder prediction 1 69 - -
Csa03g01924 940 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT C 1 939 - -
Csa03g01924 940 MobiDBLite consensus disorder prediction 158 178 - -
Csa03g01924 940 MobiDBLite consensus disorder prediction 139 236 - -
Csa03g01924 940 ProSiteProfiles PCI domain profile. 621 793 IPR000717 -
Csa03g01924 940 Coils Coil 147 174 - -
Csa03g01924 940 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 722 810 - -
Csa03g01924 940 MobiDBLite consensus disorder prediction 49 69 - -
Csa03g01924 940 PANTHER EUKARYOTIC TRANSLATION INITATION FACTOR 3, SUBUNIT 8 EIF3S8 -RELATED 1 939 IPR027516 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Csa03g01924 940 MobiDBLite consensus disorder prediction 827 940 - -
Csa03g01924 940 MobiDBLite consensus disorder prediction 34 48 - -
Csa03g01924 940 Pfam Eukaryotic translation initiation factor 3 subunit 8 N-terminus 48 652 IPR008905 GO:0003743|GO:0005852|GO:0006413|GO:0031369
Csa03g01924 940 MobiDBLite consensus disorder prediction 18 32 - -
Csa03g01924 940 SMART PINT_4 722 810 IPR000717 -
Csa03g01924 940 SUPERFAMILY Winged helix DNA-binding domain 723 792 IPR036390 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g01924 K03252 - csv:101203990 1703.72