Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g01926 ATGGGCAAAGGACCATTTTCTTTTCGCCGGAGCAGTAGTCGCCGCCGCCCTAAGAAGGTGGTTCAGTCATCACCATCCTCATCGCCACAGCTACCTCCGCAGATTAGTACCAGTTCTCCTCCCATTAACAACAATGGGAATGGCTTGGTTGGTGGTGGGGGTGGTGGGGCTGTGGGAAAAGTGAAGAAGAAGGCTGGAGGATGTAGGCTGTGGATGCGTCTTGACCGGTGGGGGCAATCAGAGCTTTTAGAGTGGGACAAGAACGCTATAATCAGACGTGTTGGAATTCCGGCCAGGGATATGAGGATTCTTGGTCCTGTTTTCTCACACTCATCTAATATACTCGCCAGGGAAAAGGCAATGGTTGTTAATTTAGAGTTTATAAAAGCTATAGTTACTGCAGAAGAAGTCCTACTACTTGACCCTCTTCGCCAAGAGGTTATTCCATTTGTAGATCAGCTAAGGAAGCTACTCGCGAAGACAGGCTCATCTCAACTTGAAAATGATGGGAATGTTTCGAGAGGAGGAAAGTGGTTGCCAGTTTCAGAGGCTGCTGAAGGTGAGCAGTATGAGCTCCCATTTGAGTTTCAGGTTCTGGAAAATGCTTTGGAGGTAGTGTGCTTGTACTTAGATTCCAGCGTGGCAGACCTTGAGAGGGATGCTTATCCAGTTCTGGATGAACTGGCTAGGAATGTCAGCACCAAGAATTTAGAACGTGTGAGGAGTTTGAAAAGTAATCTTACTCGTATTCTTGCACGTGTTCAGAAGGTGCGGGACGAGATAGAACATCTATTGGATGATAATGAAGATATGGCACAACTATATTTGACAAGGAAATGGATGCAGAATCAACAATTCGATGCTTTGATGGGAGGAGGTGGGGCTTCCAACAGCACAACTGCTGTTGTTCCTCATCTTCGTCGACTTAGTTCCAACAGGAGTGGCAGTGTGGTGACCAGCAATCTTTTGGATGATAATGACGTAGAGGACCTGGAGATGTTGCTCGAGGCATACTTTATGCAGCTGGATGGGACTCGTAACAGGATATTATCGGTTAGGGAGTACATCGACGACACCGAAGATTACGTCAACATTCAACTTGACAACCAAAGAAATGAACTCATTCAGTTTCAGTTAACACTGACTATTGCTTCATTTGCCATAGCTGTTGAAACCTTAATCGCTGGGTTGTTTGGTATGAACATCCCTTGTACATTGTACGAGAGAGATGGGGTGTTCGGGTACTTTGTCGGAGGTACTTCAGCAGGGTGTTTGTTGCTTTTCCTGGTTATTCTTGGGTATGCAAAATGGAAGAAGCTTCTTGGTTCATGA 1332 45.95 MGKGPFSFRRSSSRRRPKKVVQSSPSSSPQLPPQISTSSPPINNNGNGLVGGGGGGAVGKVKKKAGGCRLWMRLDRWGQSELLEWDKNAIIRRVGIPARDMRILGPVFSHSSNILAREKAMVVNLEFIKAIVTAEEVLLLDPLRQEVIPFVDQLRKLLAKTGSSQLENDGNVSRGGKWLPVSEAAEGEQYELPFEFQVLENALEVVCLYLDSSVADLERDAYPVLDELARNVSTKNLERVRSLKSNLTRILARVQKVRDEIEHLLDDNEDMAQLYLTRKWMQNQQFDALMGGGGASNSTTAVVPHLRRLSSNRSGSVVTSNLLDDNDVEDLEMLLEAYFMQLDGTRNRILSVREYIDDTEDYVNIQLDNQRNELIQFQLTLTIASFAIAVETLIAGLFGMNIPCTLYERDGVFGYFVGGTSAGCLLLFLVILGYAKWKKLLGS* 444
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 15039622 15057115 + CsaV3_3G019260.1 Csa03g01926 522831

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g01926 443 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 5 443 IPR039204 -
Csa03g01926 443 Coils Coil 240 274 - -
Csa03g01926 443 MobiDBLite consensus disorder prediction 18 46 - -
Csa03g01926 443 CDD Mrs2_Mfm1p-like 71 440 IPR039204 -
Csa03g01926 443 Gene3D Magnesium transport protein CorA, transmembrane region 145 374 - -
Csa03g01926 443 ProSiteProfiles Pumilio RNA-binding repeat profile. 301 336 IPR001313 GO:0003723
Csa03g01926 443 Gene3D Magnesium transport protein CorA, transmembrane region 381 441 - -
Csa03g01926 443 Pfam CorA-like Mg2+ transporter protein 244 435 IPR002523 GO:0016020|GO:0030001|GO:0046873|GO:0055085
Csa03g01926 443 PANTHER MAGNESIUM TRANSPORTER MRS2-4-RELATED 5 443 - -
Csa03g01926 443 MobiDBLite consensus disorder prediction 1 55 - -
Csa03g01926 443 Gene3D - 60 142 - -
Csa03g01926 443 SUPERFAMILY Magnesium transport protein CorA, transmembrane region 379 430 IPR045863 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g01926 K16075 MRS2, MFM1; magnesium transporter - csv:101203496 770.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g01926 Csa-Chr3:15039622 Csa03g02968 Csa-Chr3:28242018 2.63E-105 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Csa03g02968 . 1 448 MRS2 Gene Family AT1G16010 84.8 8.4e-207 716.5
Csa06g02083 . 6 381 MRS2 Gene Family AT1G16010 52.7 1.3e-106 383.6
Csa07g00672 . 37 298 MRS2 Gene Family AT1G16010 51.1 9.4e-57 218.0
Csa02g01103 . 1 366 MRS2 Gene Family AT5G64560 79.3 5.2e-157 550.8
Csa02g01155 . 1 370 MRS2 Gene Family AT5G64560 69.3 8.4e-131 463.8
Csa07g00672 . 1 321 MRS2 Gene Family AT3G19640 63.2 1.6e-94 343.6
Csa07g00673 . 12 183 MRS2 Gene Family AT3G19640 68.0 5.1e-56 215.7
Csa03g01926 . 59 444 MRS2 Gene Family AT3G58970 69.7 3.0e-140 495.4
Csa06g02083 . 6 381 MRS2 Gene Family AT2G03620 68.5 2.2e-135 479.2
Csa03g02968 . 13 448 MRS2 Gene Family AT2G03620 53.4 3.0e-113 405.6
Csa02g01103 . 1 328 MRS2 Gene Family AT5G09690 75.2 3.1e-126 448.4
Csa02g01155 . 1 332 MRS2 Gene Family AT5G09690 66.0 1.4e-110 396.4
Csa03g02968 . 40 383 MRS2 Gene Family AT5G09690 50.3 5.4e-78 288.1
Csa02g01103 . 23 288 MRS2 Gene Family AT5G09720 67.3 5.2e-88 321.2
Csa02g01155 . 34 292 MRS2 Gene Family AT5G09720 62.8 6.4e-78 287.7
Csa03g02968 . 1 448 MRS2 Gene Family AT1G80900 83.3 4.0e-201 697.6
Csa06g02083 . 6 381 MRS2 Gene Family AT1G80900 54.1 1.2e-104 377.1
Csa07g00672 . 37 304 MRS2 Gene Family AT1G80900 50.4 2.7e-56 216.5
Csa01g01423 . 13 448 MRS2 Gene Family AT5G22830 69.4 4.4e-158 554.7
Csa04g01293 . 25 237 MRS2 Gene Family AT5G22830 53.9 2.6e-49 193.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003636 0 2 1 1 1 2 2 2 2 1 2 1 2 1 1 2 2 2 2 1 1 1 2 2 1 1 1 5 2 1 47