Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g01926 ATGGGCAAAGGACCATTTTCTTTTCGCCGGAGCAGTAGTCGCCGCCGCCCTAAGAAGGTGGTTCAGTCATCACCATCCTCATCGCCACAGCTACCTCCGCAGATTAGTACCAGTTCTCCTCCCATTAACAACAATGGGAATGGCTTGGTTGGTGGTGGGGGTGGTGGGGCTGTGGGAAAAGTGAAGAAGAAGGCTGGAGGATGTAGGCTGTGGATGCGTCTTGACCGGTGGGGGCAATCAGAGCTTTTAGAGTGGGACAAGAACGCTATAATCAGACGTGTTGGAATTCCGGCCAGGGATATGAGGATTCTTGGTCCTGTTTTCTCACACTCATCTAATATACTCGCCAGGGAAAAGGCAATGGTTGTTAATTTAGAGTTTATAAAAGCTATAGTTACTGCAGAAGAAGTCCTACTACTTGACCCTCTTCGCCAAGAGGTTATTCCATTTGTAGATCAGCTAAGGAAGCTACTCGCGAAGACAGGCTCATCTCAACTTGAAAATGATGGGAATGTTTCGAGAGGAGGAAAGTGGTTGCCAGTTTCAGAGGCTGCTGAAGGTGAGCAGTATGAGCTCCCATTTGAGTTTCAGGTTCTGGAAAATGCTTTGGAGGTAGTGTGCTTGTACTTAGATTCCAGCGTGGCAGACCTTGAGAGGGATGCTTATCCAGTTCTGGATGAACTGGCTAGGAATGTCAGCACCAAGAATTTAGAACGTGTGAGGAGTTTGAAAAGTAATCTTACTCGTATTCTTGCACGTGTTCAGAAGGTGCGGGACGAGATAGAACATCTATTGGATGATAATGAAGATATGGCACAACTATATTTGACAAGGAAATGGATGCAGAATCAACAATTCGATGCTTTGATGGGAGGAGGTGGGGCTTCCAACAGCACAACTGCTGTTGTTCCTCATCTTCGTCGACTTAGTTCCAACAGGAGTGGCAGTGTGGTGACCAGCAATCTTTTGGATGATAATGACGTAGAGGACCTGGAGATGTTGCTCGAGGCATACTTTATGCAGCTGGATGGGACTCGTAACAGGATATTATCGGTTAGGGAGTACATCGACGACACCGAAGATTACGTCAACATTCAACTTGACAACCAAAGAAATGAACTCATTCAGTTTCAGTTAACACTGACTATTGCTTCATTTGCCATAGCTGTTGAAACCTTAATCGCTGGGTTGTTTGGTATGAACATCCCTTGTACATTGTACGAGAGAGATGGGGTGTTCGGGTACTTTGTCGGAGGTACTTCAGCAGGGTGTTTGTTGCTTTTCCTGGTTATTCTTGGGTATGCAAAATGGAAGAAGCTTCTTGGTTCATGA 1332 45.95 MGKGPFSFRRSSSRRRPKKVVQSSPSSSPQLPPQISTSSPPINNNGNGLVGGGGGGAVGKVKKKAGGCRLWMRLDRWGQSELLEWDKNAIIRRVGIPARDMRILGPVFSHSSNILAREKAMVVNLEFIKAIVTAEEVLLLDPLRQEVIPFVDQLRKLLAKTGSSQLENDGNVSRGGKWLPVSEAAEGEQYELPFEFQVLENALEVVCLYLDSSVADLERDAYPVLDELARNVSTKNLERVRSLKSNLTRILARVQKVRDEIEHLLDDNEDMAQLYLTRKWMQNQQFDALMGGGGASNSTTAVVPHLRRLSSNRSGSVVTSNLLDDNDVEDLEMLLEAYFMQLDGTRNRILSVREYIDDTEDYVNIQLDNQRNELIQFQLTLTIASFAIAVETLIAGLFGMNIPCTLYERDGVFGYFVGGTSAGCLLLFLVILGYAKWKKLLGS* 444
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 15039622 15057115 + CsaV3_3G019260.1 Csa03g01926 522831
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g01926 443 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 5 443 IPR039204 -
Csa03g01926 443 Coils Coil 240 274 - -
Csa03g01926 443 MobiDBLite consensus disorder prediction 18 46 - -
Csa03g01926 443 CDD Mrs2_Mfm1p-like 71 440 IPR039204 -
Csa03g01926 443 Gene3D Magnesium transport protein CorA, transmembrane region 145 374 - -
Csa03g01926 443 ProSiteProfiles Pumilio RNA-binding repeat profile. 301 336 IPR001313 GO:0003723
Csa03g01926 443 Gene3D Magnesium transport protein CorA, transmembrane region 381 441 - -
Csa03g01926 443 Pfam CorA-like Mg2+ transporter protein 244 435 IPR002523 GO:0016020|GO:0030001|GO:0046873|GO:0055085
Csa03g01926 443 PANTHER MAGNESIUM TRANSPORTER MRS2-4-RELATED 5 443 - -
Csa03g01926 443 MobiDBLite consensus disorder prediction 1 55 - -
Csa03g01926 443 Gene3D - 60 142 - -
Csa03g01926 443 SUPERFAMILY Magnesium transport protein CorA, transmembrane region 379 430 IPR045863 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g01926 Csa-Chr3:15039622 Csa03g02968 Csa-Chr3:28242018 2.63E-105 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g01926 K16075 - csv:101203496 770.0